@proceedings{ws-2017-bionlp,
    title = "Proceedings of the 16th {B}io{NLP} Workshop",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2300/"
}
@inproceedings{adams-etal-2017-target,
    title = "Target word prediction and paraphasia classification in spoken discourse",
    author = "Adams, Joel  and
      Bedrick, Steven  and
      Fergadiotis, Gerasimos  and
      Gorman, Kyle  and
      van Santen, Jan",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2301/",
    doi = "10.18653/v1/W17-2301",
    pages = "1--8"
}
@inproceedings{asada-etal-2017-extracting,
    title = "Extracting Drug-Drug Interactions with Attention {CNN}s",
    author = "Asada, Masaki  and
      Miwa, Makoto  and
      Sasaki, Yutaka",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2302/",
    doi = "10.18653/v1/W17-2302",
    pages = "9--18"
}
@inproceedings{newman-griffis-etal-2017-insights,
    title = "Insights into Analogy Completion from the Biomedical Domain",
    author = "Newman-Griffis, Denis  and
      Lai, Albert  and
      Fosler-Lussier, Eric",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2303/",
    doi = "10.18653/v1/W17-2303",
    pages = "19--28"
}
@inproceedings{peng-lu-2017-deep,
    title = "Deep learning for extracting protein-protein interactions from biomedical literature",
    author = "Peng, Yifan  and
      Lu, Zhiyong",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2304/",
    doi = "10.18653/v1/W17-2304",
    pages = "29--38"
}
@inproceedings{rajani-etal-2017-stacking,
    title = "Stacking With Auxiliary Features for Entity Linking in the Medical Domain",
    author = "Rajani, Nazneen Fatema  and
      Bornea, Mihaela  and
      Barker, Ken",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2305/",
    doi = "10.18653/v1/W17-2305",
    pages = "39--47"
}
@inproceedings{nentidis-etal-2017-results,
    title = "Results of the fifth edition of the {B}io{ASQ} Challenge",
    author = "Nentidis, Anastasios  and
      Bougiatiotis, Konstantinos  and
      Krithara, Anastasia  and
      Paliouras, Georgios  and
      Kakadiaris, Ioannis",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2306/",
    doi = "10.18653/v1/W17-2306",
    pages = "48--57"
}
@inproceedings{chandu-etal-2017-tackling,
    title = "Tackling Biomedical Text Summarization: {OAQA} at {B}io{ASQ} 5{B}",
    author = "Chandu, Khyathi  and
      Naik, Aakanksha  and
      Chandrasekar, Aditya  and
      Yang, Zi  and
      Gupta, Niloy  and
      Nyberg, Eric",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2307/",
    doi = "10.18653/v1/W17-2307",
    pages = "58--66"
}
@inproceedings{molla-2017-macquarie,
    title = "{M}acquarie {U}niversity at {B}io{ASQ} 5b {--} Query-based Summarisation Techniques for Selecting the Ideal Answers",
    author = "Moll{\'a}, Diego",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2308/",
    doi = "10.18653/v1/W17-2308",
    pages = "67--75"
}
@inproceedings{wiese-etal-2017-neural-question,
    title = "Neural Question Answering at {B}io{ASQ} 5{B}",
    author = "Wiese, Georg  and
      Weissenborn, Dirk  and
      Neves, Mariana",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2309/",
    doi = "10.18653/v1/W17-2309",
    pages = "76--79"
}
@inproceedings{mehryary-etal-2017-end,
    title = "End-to-End System for Bacteria Habitat Extraction",
    author = {Mehryary, Farrokh  and
      Hakala, Kai  and
      Kaewphan, Suwisa  and
      Bj{\"o}rne, Jari  and
      Salakoski, Tapio  and
      Ginter, Filip},
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2310/",
    doi = "10.18653/v1/W17-2310",
    pages = "80--90"
}
@inproceedings{cook-etal-2017-creation,
    title = "Creation and evaluation of a dictionary-based tagger for virus species and proteins",
    author = "Cook, Helen  and
      B{\={e}}rzi{\c{n}}{\v{s}}, R{\={u}}dolfs  and
      Rodr{\i}guez, Cristina Leal  and
      Cejuela, Juan Miguel  and
      Jensen, Lars Juhl",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2311/",
    doi = "10.18653/v1/W17-2311",
    pages = "91--98"
}
@inproceedings{ferre-etal-2017-representation,
    title = "Representation of complex terms in a vector space structured by an ontology for a normalization task",
    author = "Ferr{\'e}, Arnaud  and
      Zweigenbaum, Pierre  and
      N{\'e}dellec, Claire",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2312/",
    doi = "10.18653/v1/W17-2312",
    pages = "99--106"
}
@inproceedings{mcinnes-pedersen-2017-improving,
    title = "Improving Correlation with Human Judgments by Integrating Semantic Similarity with Second{--}Order Vectors",
    author = "McInnes, Bridget  and
      Pedersen, Ted",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2313/",
    doi = "10.18653/v1/W17-2313",
    pages = "107--116"
}
@inproceedings{li-etal-2017-proactive,
    title = "Proactive Learning for Named Entity Recognition",
    author = "Li, Maolin  and
      Nguyen, Nhung  and
      Ananiadou, Sophia",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2314/",
    doi = "10.18653/v1/W17-2314",
    pages = "117--125"
}
@inproceedings{rao-etal-2017-biomedical,
    title = "Biomedical Event Extraction using {A}bstract {M}eaning {R}epresentation",
    author = "Rao, Sudha  and
      Marcu, Daniel  and
      Knight, Kevin  and
      Daum{\'e} III, Hal",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2315/",
    doi = "10.18653/v1/W17-2315",
    pages = "126--135"
}
@inproceedings{klein-etal-2017-detecting,
    title = "Detecting Personal Medication Intake in {T}witter: An Annotated Corpus and Baseline Classification System",
    author = "Klein, Ari  and
      Sarker, Abeed  and
      Rouhizadeh, Masoud  and
      O{'}Connor, Karen  and
      Gonzalez, Graciela",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2316/",
    doi = "10.18653/v1/W17-2316",
    pages = "136--142"
}
@inproceedings{fivez-etal-2017-unsupervised,
    title = "Unsupervised Context-Sensitive Spelling Correction of Clinical Free-Text with Word and Character N-Gram Embeddings",
    author = "Fivez, Pieter  and
      {\v{S}}uster, Simon  and
      Daelemans, Walter",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2317/",
    doi = "10.18653/v1/W17-2317",
    pages = "143--148"
}
@inproceedings{bhatia-etal-2017-characterization,
    title = "Characterization of Divergence in Impaired Speech of {ALS} Patients",
    author = "Bhatia, Archna  and
      Dorr, Bonnie  and
      Hollingshead, Kristy  and
      Phillips, Samuel L.  and
      McKenzie, Barbara",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2318/",
    doi = "10.18653/v1/W17-2318",
    pages = "149--158"
}
@inproceedings{salloum-etal-2017-deep,
    title = "Deep Learning for Punctuation Restoration in Medical Reports",
    author = "Salloum, Wael  and
      Finley, Greg  and
      Edwards, Erik  and
      Miller, Mark  and
      Suendermann-Oeft, David",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2319/",
    doi = "10.18653/v1/W17-2319",
    pages = "159--164"
}
@inproceedings{miller-etal-2017-unsupervised,
    title = "Unsupervised Domain Adaptation for Clinical Negation Detection",
    author = "Miller, Timothy  and
      Bethard, Steven  and
      Amiri, Hadi  and
      Savova, Guergana",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2320/",
    doi = "10.18653/v1/W17-2320",
    pages = "165--170"
}
@inproceedings{islamaj-dogan-etal-2017-biocreative,
    title = "{B}io{C}reative {VI} Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations",
    author = "Islamaj Do{\u{g}}an, Rezarta  and
      Chatr-aryamontri, Andrew  and
      Kim, Sun  and
      Wei, Chih-Hsuan  and
      Peng, Yifan  and
      Comeau, Donald  and
      Lu, Zhiyong",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2321/",
    doi = "10.18653/v1/W17-2321",
    pages = "171--175"
}
@inproceedings{lever-jones-2017-painless,
    title = "Painless Relation Extraction with Kindred",
    author = "Lever, Jake  and
      Jones, Steven",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2322/",
    doi = "10.18653/v1/W17-2322",
    pages = "176--183"
}
@inproceedings{li-etal-2017-noise,
    title = "Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction",
    author = "Li, Gang  and
      Wu, Cathy  and
      Vijay-Shanker, K.",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2323/",
    doi = "10.18653/v1/W17-2323",
    pages = "184--193"
}
@inproceedings{polsley-etal-2017-role,
    title = "Role-Preserving Redaction of Medical Records to Enable Ontology-Driven Processing",
    author = "Polsley, Seth  and
      Tahir, Atif  and
      Raju, Muppala  and
      Akinleye, Akintayo  and
      Steward, Duane",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2324/",
    doi = "10.18653/v1/W17-2324",
    pages = "194--199"
}
@inproceedings{yim-etal-2017-annotation,
    title = "Annotation of pain and anesthesia events for surgery-related processes and outcomes extraction",
    author = "Yim, Wen-wai  and
      Tedesco, Dario  and
      Curtin, Catherine  and
      Hernandez-Boussard, Tina",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2325/",
    doi = "10.18653/v1/W17-2325",
    pages = "200--205"
}
@inproceedings{gupta-etal-2017-identifying,
    title = "Identifying Comparative Structures in Biomedical Text",
    author = "Gupta, Samir  and
      Mahmood, A.S.M. Ashique  and
      Ross, Karen  and
      Wu, Cathy  and
      Vijay-Shanker, K.",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2326/",
    doi = "10.18653/v1/W17-2326",
    pages = "206--215"
}
@inproceedings{kayal-etal-2017-tagging,
    title = "Tagging Funding Agencies and Grants in Scientific Articles using Sequential Learning Models",
    author = "Kayal, Subhradeep  and
      Afzal, Zubair  and
      Tsatsaronis, George  and
      Katrenko, Sophia  and
      Coupet, Pascal  and
      Doornenbal, Marius  and
      Gregory, Michelle",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2327/",
    doi = "10.18653/v1/W17-2327",
    pages = "216--221"
}
@inproceedings{mohan-etal-2017-deep,
    title = "Deep Learning for Biomedical Information Retrieval: Learning Textual Relevance from Click Logs",
    author = "Mohan, Sunil  and
      Fiorini, Nicolas  and
      Kim, Sun  and
      Lu, Zhiyong",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2328/",
    doi = "10.18653/v1/W17-2328",
    pages = "222--231"
}
@inproceedings{masrani-etal-2017-detecting,
    title = "Detecting Dementia through Retrospective Analysis of Routine Blog Posts by Bloggers with Dementia",
    author = "Masrani, Vaden  and
      Murray, Gabriel  and
      Field, Thalia  and
      Carenini, Giuseppe",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2329/",
    doi = "10.18653/v1/W17-2329",
    pages = "232--237"
}
@inproceedings{ganesan-etal-2017-protein,
    title = "Protein Word Detection using Text Segmentation Techniques",
    author = "Ganesan, Devi  and
      Tendulkar, Ashish V.  and
      Chakraborti, Sutanu",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2330/",
    doi = "10.18653/v1/W17-2330",
    pages = "238--246"
}
@inproceedings{kusa-spranger-2017-external,
    title = "External Evaluation of Event Extraction Classifiers for Automatic Pathway Curation: An extended study of the m{TOR} pathway",
    author = "Kusa, Wojciech  and
      Spranger, Michael",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2331/",
    doi = "10.18653/v1/W17-2331",
    pages = "247--256"
}
@inproceedings{apostolova-velez-2017-toward,
    title = "Toward Automated Early Sepsis Alerting: Identifying Infection Patients from Nursing Notes",
    author = "Apostolova, Emilia  and
      Velez, Tom",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2332/",
    doi = "10.18653/v1/W17-2332",
    pages = "257--262"
}
@inproceedings{zhang-etal-2017-enhancing,
    title = "Enhancing Automatic {ICD}-9-{CM} Code Assignment for Medical Texts with {P}ub{M}ed",
    author = "Zhang, Danchen  and
      He, Daqing  and
      Zhao, Sanqiang  and
      Li, Lei",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2333/",
    doi = "10.18653/v1/W17-2333",
    pages = "263--271"
}
@inproceedings{henry-etal-2017-evaluating,
    title = "Evaluating Feature Extraction Methods for Knowledge-based Biomedical Word Sense Disambiguation",
    author = "Henry, Sam  and
      Cuffy, Clint  and
      McInnes, Bridget",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2334/",
    doi = "10.18653/v1/W17-2334",
    pages = "272--281"
}
@inproceedings{mowery-etal-2017-investigating,
    title = "Investigating the Documentation of Electronic Cigarette Use in the Veteran Affairs Electronic Health Record: A Pilot Study",
    author = "Mowery, Danielle  and
      South, Brett  and
      Patterson, Olga  and
      Zhu, Shu-Hong  and
      Conway, Mike",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2335/",
    doi = "10.18653/v1/W17-2335",
    pages = "282--286"
}
@inproceedings{salloum-etal-2017-automated,
    title = "Automated Preamble Detection in Dictated Medical Reports",
    author = "Salloum, Wael  and
      Finley, Greg  and
      Edwards, Erik  and
      Miller, Mark  and
      Suendermann-Oeft, David",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2336/",
    doi = "10.18653/v1/W17-2336",
    pages = "287--295"
}
@inproceedings{sarrouti-ouatik-el-alaoui-2017-biomedical,
    title = "A Biomedical Question Answering System in {B}io{ASQ} 2017",
    author = "Sarrouti, Mourad  and
      Ouatik El Alaoui, Said",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2337/",
    doi = "10.18653/v1/W17-2337",
    pages = "296--301"
}
@inproceedings{patel-etal-2017-adapting,
    title = "Adapting Pre-trained Word Embeddings For Use In Medical Coding",
    author = "Patel, Kevin  and
      Patel, Divya  and
      Golakiya, Mansi  and
      Bhattacharyya, Pushpak  and
      Birari, Nilesh",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2338/",
    doi = "10.18653/v1/W17-2338",
    pages = "302--306"
}
@inproceedings{baker-korhonen-2017-initializing,
    title = "Initializing neural networks for hierarchical multi-label text classification",
    author = "Baker, Simon  and
      Korhonen, Anna",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2339/",
    doi = "10.18653/v1/W17-2339",
    pages = "307--315"
}
@inproceedings{v-s-s-patchigolla-etal-2017-biomedical,
    title = "Biomedical Event Trigger Identification Using Bidirectional Recurrent Neural Network Based Models",
    author = "V S S Patchigolla, Rahul  and
      Sahu, Sunil  and
      Anand, Ashish",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2340/",
    doi = "10.18653/v1/W17-2340",
    pages = "316--321"
}
@inproceedings{lin-etal-2017-representations,
    title = "Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks",
    author = "Lin, Chen  and
      Miller, Timothy  and
      Dligach, Dmitriy  and
      Bethard, Steven  and
      Savova, Guergana",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2341/",
    doi = "10.18653/v1/W17-2341",
    pages = "322--327"
}
@inproceedings{karimi-etal-2017-automatic,
    title = "Automatic Diagnosis Coding of Radiology Reports: A Comparison of Deep Learning and Conventional Classification Methods",
    author = "Karimi, Sarvnaz  and
      Dai, Xiang  and
      Hassanzadeh, Hamed  and
      Nguyen, Anthony",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2342/",
    doi = "10.18653/v1/W17-2342",
    pages = "328--332"
}
@inproceedings{campillos-llanos-etal-2017-automatic,
    title = "Automatic classification of doctor-patient questions for a virtual patient record query task",
    author = "Campillos Llanos, Leonardo  and
      Rosset, Sophie  and
      Zweigenbaum, Pierre",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2343/",
    doi = "10.18653/v1/W17-2343",
    pages = "333--341"
}
@inproceedings{neves-etal-2017-assessing,
    title = "Assessing the performance of {O}lelo, a real-time biomedical question answering application",
    author = "Neves, Mariana  and
      Eckert, Fabian  and
      Folkerts, Hendrik  and
      Uflacker, Matthias",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2344/",
    doi = "10.18653/v1/W17-2344",
    pages = "342--350"
}
@inproceedings{maharana-yetisgen-2017-clinical,
    title = "Clinical Event Detection with Hybrid Neural Architecture",
    author = "Maharana, Adyasha  and
      Yetisgen, Meliha",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2345/",
    doi = "10.18653/v1/W17-2345",
    pages = "351--355"
}
@inproceedings{naik-etal-2017-extracting,
    title = "Extracting Personal Medical Events for User Timeline Construction using Minimal Supervision",
    author = "Naik, Aakanksha  and
      Bogart, Chris  and
      Rose, Carolyn",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2346/",
    doi = "10.18653/v1/W17-2346",
    pages = "356--364"
}
@inproceedings{moen-etal-2017-detecting,
    title = "Detecting mentions of pain and acute confusion in {F}innish clinical text",
    author = {Moen, Hans  and
      Hakala, Kai  and
      Mehryary, Farrokh  and
      Peltonen, Laura-Maria  and
      Salakoski, Tapio  and
      Ginter, Filip  and
      Salanter{\"a}, Sanna},
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2347/",
    doi = "10.18653/v1/W17-2347",
    pages = "365--372"
}
@inproceedings{jin-etal-2017-multi,
    title = "A Multi-strategy Query Processing Approach for Biomedical Question Answering: {USTB}{\_}{PRIR} at {B}io{ASQ} 2017 Task 5{B}",
    author = "Jin, Zan-Xia  and
      Zhang, Bo-Wen  and
      Fang, Fan  and
      Zhang, Le-Le  and
      Yin, Xu-Cheng",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Tsujii, Junichi",
    booktitle = "Proceedings of the 16th {B}io{NLP} Workshop",
    month = aug,
    year = "2017",
    address = "Vancouver, Canada,",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W17-2348/",
    doi = "10.18653/v1/W17-2348",
    pages = "373--380"
}