@proceedings{ws-2013-bionlp,
    title = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2000/"
}
@inproceedings{nedellec-etal-2013-overview,
    title = "Overview of {B}io{NLP} Shared Task 2013",
    author = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2001/",
    pages = "1--7"
}
@inproceedings{kim-etal-2013-genia,
    title = "The {G}enia Event Extraction Shared Task, 2013 Edition - Overview",
    author = "Kim, Jin-Dong  and
      Wang, Yue  and
      Yasunori, Yamamoto",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2002/",
    pages = "8--15"
}
@inproceedings{bjorne-salakoski-2013-tees,
    title = "{TEES} 2.1: Automated Annotation Scheme Learning in the {B}io{NLP} 2013 Shared Task",
    author = {Bj{\"o}rne, Jari  and
      Salakoski, Tapio},
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2003/",
    pages = "16--25"
}
@inproceedings{hakala-etal-2013-evex,
    title = "{EVEX} in {ST}{'}13: Application of a large-scale text mining resource to event extraction and network construction",
    author = "Hakala, Kai  and
      Van Landeghem, Sofie  and
      Salakoski, Tapio  and
      Van de Peer, Yves  and
      Ginter, Filip",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2004/",
    pages = "26--34"
}
@inproceedings{mackinlay-etal-2013-extracting,
    title = "Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data",
    author = "MacKinlay, Andrew  and
      Martinez, David  and
      Jimeno Yepes, Antonio  and
      Liu, Haibin  and
      Wilbur, W. John  and
      Verspoor, Karin",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2005/",
    pages = "35--44"
}
@inproceedings{liu-etal-2013-biomedical,
    title = "Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities",
    author = "Liu, Xiao  and
      Bordes, Antoine  and
      Grandvalet, Yves",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2006/",
    pages = "45--49"
}
@inproceedings{kim-etal-2013-gro,
    title = "{GRO} Task: Populating the Gene Regulation Ontology with events and relations",
    author = "Kim, Jung-jae  and
      Han, Xu  and
      Lee, Vivian  and
      Rebholz-Schuhmann, Dietrich",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2007/",
    pages = "50--57"
}
@inproceedings{pyysalo-etal-2013-overview,
    title = "Overview of the Cancer Genetics ({CG}) task of {B}io{NLP} Shared Task 2013",
    author = "Pyysalo, Sampo  and
      Ohta, Tomoko  and
      Ananiadou, Sophia",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2008/",
    pages = "58--66"
}
@inproceedings{ohta-etal-2013-overview,
    title = "Overview of the Pathway Curation ({PC}) task of {B}io{NLP} Shared Task 2013",
    author = "Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Rak, Rafal  and
      Rowley, Andrew  and
      Chun, Hong-Woo  and
      Jung, Sung-Jae  and
      Choi, Sung-Pil  and
      Ananiadou, Sophia  and
      Tsujii, Jun{'}ichi",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2009/",
    pages = "67--75"
}
@inproceedings{liu-etal-2013-generalizing,
    title = "Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics",
    author = "Liu, Haibin  and
      Verspoor, Karin  and
      Comeau, Donald C.  and
      MacKinlay, Andrew  and
      Wilbur, W. John",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2010/",
    pages = "76--85"
}
@inproceedings{ramanan-nathan-2013-performance,
    title = "Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.",
    author = "Ramanan, SV  and
      Nathan, P. Senthil",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2011/",
    pages = "86--93"
}
@inproceedings{miwa-ananiadou-2013-nactem,
    title = "{N}a{CT}e{M} {E}vent{M}ine for {B}io{NLP} 2013 {CG} and {PC} tasks",
    author = "Miwa, Makoto  and
      Ananiadou, Sophia",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2012/",
    pages = "94--98"
}
@inproceedings{stenetorp-etal-2013-bionlp,
    title = "{B}io{NLP} Shared Task 2013: Supporting Resources",
    author = "Stenetorp, Pontus  and
      Golik, Wiktoria  and
      Hamon, Thierry  and
      Comeau, Donald C.  and
      Islamaj Do{\u{g}}an, Rezarta  and
      Liu, Haibin  and
      Wilbur, W. John",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2013/",
    pages = "99--103"
}
@inproceedings{bui-etal-2013-fast,
    title = "A fast rule-based approach for biomedical event extraction",
    author = "Bui, Quoc-Chinh  and
      Campos, David  and
      van Mulligen, Erik  and
      Kors, Jan",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2014/",
    pages = "104--108"
}
@inproceedings{li-etal-2013-improving,
    title = "Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information",
    author = "Li, Lishuang  and
      Wang, Yiwen  and
      Huang, Degen",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2015/",
    pages = "109--115"
}
@inproceedings{schneider-etal-2013-uzh,
    title = "{UZH} in {B}io{NLP} 2013",
    author = "Schneider, Gerold  and
      Clematide, Simon  and
      Ellendorff, Tilia  and
      Tuggener, Don  and
      Rinaldi, Fabio  and
      Grigonyt{\.{e}}, Gintar{\.{e}}",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2016/",
    pages = "116--120"
}
@inproceedings{pham-etal-2013-hybrid,
    title = "A Hybrid approach for biomedical event extraction",
    author = "Pham, Xuan Quang  and
      Le, Minh Quang  and
      Ho, Bao Quoc",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2017/",
    pages = "121--124"
}
@inproceedings{roller-stevenson-2013-identification,
    title = "Identification of {G}enia Events using Multiple Classifiers",
    author = "Roller, Roland  and
      Stevenson, Mark",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2018/",
    pages = "125--129"
}
@inproceedings{tran-etal-2013-exploring,
    title = "Exploring a Probabilistic {E}arley Parser for Event Composition in Biomedical Texts",
    author = "Tran, Mai-Vu  and
      Collier, Nigel  and
      Le, Hoang-Quynh  and
      Phi, Van-Thuy  and
      Pham, Thanh-Binh",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2019/",
    pages = "130--134"
}
@inproceedings{provoost-moens-2013-detecting,
    title = "Detecting Relations in the Gene Regulation Network",
    author = "Provoost, Thomas  and
      Moens, Marie-Francine",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2020/",
    pages = "135--138"
}
@inproceedings{bannour-etal-2013-ontology,
    title = "Ontology-based semantic annotation: an automatic hybrid rule-based method",
    author = "Bannour, Sondes  and
      Audibert, Laurent  and
      Soldano, Henry",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2021/",
    pages = "139--143"
}
@inproceedings{grouin-2013-building,
    title = "Building A Contrasting Taxa Extractor for Relation Identification from Assertions: {BIO}logical Taxonomy {\&} Ontology Phrase Extraction System",
    author = "Grouin, Cyril",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2022/",
    pages = "144--152"
}
@inproceedings{bossy-etal-2013-bionlp,
    title = "{B}io{NLP} Shared Task 2013 {--} An overview of the Genic Regulation Network Task",
    author = "Bossy, Robert  and
      Bessi{\`e}res, Philippe  and
      N{\'e}dellec, Claire",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2023/",
    pages = "153--160"
}
@inproceedings{bossy-etal-2013-bionlp-shared,
    title = "{B}io{NLP} shared Task 2013 {--} An Overview of the Bacteria Biotope Task",
    author = "Bossy, Robert  and
      Golik, Wiktoria  and
      Ratkovic, Zorana  and
      Bessi{\`e}res, Philippe  and
      N{\'e}dellec, Claire",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2024/",
    pages = "161--169"
}
@inproceedings{karadeniz-ozgur-2013-bacteria,
    title = "Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules",
    author = {Karadeniz, {\.I}lknur  and
      {\"O}zg{\"u}r, Arzucan},
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2025/",
    pages = "170--177"
}
@inproceedings{zitnik-etal-2013-extracting,
    title = "Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules",
    author = "{\v{Z}}itnik, Slavko  and
      {\v{Z}}itnik, Marinka  and
      Zupan, Bla{\v{z}}  and
      Bajec, Marko",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2026/",
    pages = "178--187"
}
@inproceedings{claveau-2013-irisa,
    title = "{IRISA} participation to {B}io{NLP}-{ST}13: lazy-learning and information retrieval for information extraction tasks",
    author = "Claveau, Vincent",
    editor = "N{\'e}dellec, Claire  and
      Bossy, Robert  and
      Kim, Jin-Dong  and
      Kim, Jung-jae  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Zweigenbaum, Pierre",
    booktitle = "Proceedings of the {B}io{NLP} Shared Task 2013 Workshop",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W13-2027/",
    pages = "188--196"
}