@proceedings{ws-2008-current,
    title = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0600/"
}
@inproceedings{airola-etal-2008-graph,
    title = "A Graph Kernel for Protein-Protein Interaction Extraction",
    author = {Airola, Antti  and
      Pyysalo, Sampo  and
      Bj{\"o}rne, Jari  and
      Pahikkala, Tapio  and
      Ginter, Filip  and
      Salakoski, Tapio},
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0601/",
    pages = "1--9"
}
@inproceedings{roberts-etal-2008-extracting,
    title = "Extracting Clinical Relationships from Patient Narratives",
    author = "Roberts, Angus  and
      Gaizauskas, Robert  and
      Hepple, Mark",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0602/",
    pages = "10--18"
}
@inproceedings{haddow-2008-using,
    title = "Using Automated Feature Optimisation to Create an Adaptable Relation Extraction System",
    author = "Haddow, Barry",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0603/",
    pages = "19--27"
}
@inproceedings{tudor-etal-2008-mining,
    title = "Mining the Biomedical Literature for Genic Information",
    author = "Tudor, Catalina O.  and
      Vijay-Shanker, K.  and
      Schmidt, Carl J.",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0604/",
    pages = "28--29"
}
@inproceedings{tsuruoka-etal-2008-accelerating,
    title = "Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection",
    author = "Tsuruoka, Yoshimasa  and
      Tsujii, Jun{'}ichi  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0605/",
    pages = "30--37"
}
@inproceedings{szarvas-etal-2008-bioscope,
    title = "The {B}io{S}cope corpus: annotation for negation, uncertainty and their scope in biomedical texts",
    author = {Szarvas, Gy{\"o}rgy  and
      Vincze, Veronika  and
      Farkas, Rich{\'a}rd  and
      Csirik, J{\'a}nos},
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0606/",
    pages = "38--45"
}
@inproceedings{kilicoglu-bergler-2008-recognizing,
    title = "Recognizing Speculative Language in Biomedical Research Articles: A Linguistically Motivated Perspective",
    author = "Kilicoglu, Halil  and
      Bergler, Sabine",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0607/",
    pages = "46--53"
}
@inproceedings{corbett-copestake-2008-cascaded,
    title = "Cascaded Classifiers for Confidence-Based Chemical Named Entity Recognition",
    author = "Corbett, Peter  and
      Copestake, Ann",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0608/",
    pages = "54--62"
}
@inproceedings{sasaki-etal-2008-make,
    title = "How to Make the Most of {NE} Dictionaries in Statistical {NER}",
    author = "Sasaki, Yutaka  and
      Tsuruoka, Yoshimasa  and
      McNaught, John  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0609/",
    pages = "63--70"
}
@inproceedings{wang-matthews-2008-species,
    title = "Species Disambiguation for Biomedical Term Identification",
    author = "Wang, Xinglong  and
      Matthews, Michael",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0610/",
    pages = "71--79"
}
@inproceedings{stevenson-etal-2008-knowledge,
    title = "Knowledge Sources for Word Sense Disambiguation of Biomedical Text",
    author = "Stevenson, Mark  and
      Guo, Yinkun  and
      Gaizauskas, Robert  and
      Martinez, David",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0611/",
    pages = "80--87"
}
@inproceedings{neveol-etal-2008-automatic,
    title = "Automatic inference of indexing rules for {MEDLINE}",
    author = "N{\'e}v{\'e}ol, Aur{\'e}lie  and
      Shooshan, Sonya  and
      Claveau, Vincent",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0612/",
    pages = "88--89"
}
@inproceedings{chun-etal-2008-prediction,
    title = "Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.",
    author = "Chun, Hong-Woo  and
      Yamasaki, Chisato  and
      Saichi, Naomi  and
      Tanaka, Masayuki  and
      Hishiki, Teruyoshi  and
      Imanishi, Tadashi  and
      Gojobori, Takashi  and
      Kim, Jin-Dong  and
      Tsujii, Jun{'}ichi  and
      Takagi, Toshihisa",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0613/",
    pages = "90--91"
}
@inproceedings{yu-etal-2008-pilot,
    title = "A Pilot Annotation to Investigate Discourse Connectivity in Biomedical Text",
    author = "Yu, Hong  and
      Frid, Nadya  and
      McRoy, Susan  and
      Prasad, Rashmi  and
      Lee, Alan  and
      Joshi, Aravind",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0614/",
    pages = "92--93"
}
@inproceedings{li-etal-2008-conditional,
    title = "Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts",
    author = "Li, Dingcheng  and
      Savova, Guergana  and
      Kipper-Schuler, Karin",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0615/",
    pages = "94--95"
}
@inproceedings{pestian-etal-2008-using,
    title = "Using Natural Language Processing to Classify Suicide Notes",
    author = "Pestian, John  and
      Matykiewicz, Pawel  and
      Grupp-Phelan, Jacqueline  and
      Arszman Lavanier, Sarah  and
      Combs, Jennifer  and
      Kowatch, Robert",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0616/",
    pages = "96--97"
}
@inproceedings{zhou-he-2008-extracting,
    title = "Extracting Protein-Protein Interaction based on Discriminative Training of the Hidden Vector State Model",
    author = "Zhou, Deyu  and
      He, Yulan",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0617/",
    pages = "98--99"
}
@inproceedings{segura-bedmar-etal-2008-preliminary,
    title = "A preliminary approach to extract drugs by combining {UMLS} resources and {USAN} naming conventions",
    author = "Segura-Bedmar, Isabel  and
      Mart{\'i}nez, Paloma  and
      Samy, Doaa",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0618/",
    pages = "100--101"
}
@inproceedings{wang-patrick-2008-mapping,
    title = "Mapping Clinical Notes to Medical Terminologies at Point of Care",
    author = "Wang, Yefeng  and
      Patrick, Jon",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0619/",
    pages = "102--103"
}
@inproceedings{bloodgood-vijay-shanker-2008-approach,
    title = "An Approach to Reducing Annotation Costs for {B}io{NLP}",
    author = "Bloodgood, Michael  and
      Vijay-Shanker, K.",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0620/",
    pages = "104--105"
}
@inproceedings{mowery-etal-2008-temporal,
    title = "Temporal Annotation of Clinical Text",
    author = "Mowery, Danielle  and
      Harkema, Henk  and
      Chapman, Wendy",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0621/",
    pages = "106--107"
}
@inproceedings{neves-etal-2008-cbr,
    title = "{CBR}-Tagger: a case-based reasoning approach to the gene/protein mention problem",
    author = "Neves, Mariana  and
      Chagoyen, Monica  and
      Carazo, Jos{\'e} Mar{\'i}a  and
      Pascual-Montano, Alberto",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0622/",
    pages = "108--109"
}
@inproceedings{frunza-inkpen-2008-textual,
    title = "Textual Information for Predicting Functional Properties of the Genes",
    author = "Frunza, Oana  and
      Inkpen, Diana",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0623/",
    pages = "110--111"
}
@inproceedings{van-der-horn-etal-2008-determining,
    title = "Determining causal and non-causal relationships in biomedical text by classifying verbs using a Naive {B}ayesian Classifier",
    author = "van der Horn, Pieter  and
      Bakker, Bart  and
      Geleijnse, Gijs  and
      Korst, Jan  and
      Kurkin, Sergei",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0624/",
    pages = "112--113"
}
@inproceedings{buitelaar-etal-2008-statistical,
    title = "Statistical Term Profiling for Query Pattern Mining",
    author = "Buitelaar, Paul  and
      Oezden Wennerberg, Pinar  and
      Zillner, Sonja",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0625/",
    pages = "114--115"
}
@inproceedings{solorio-liu-2008-using,
    title = "Using Language Models to Identify Language Impairment in {S}panish-{E}nglish Bilingual Children",
    author = "Solorio, Thamar  and
      Liu, Yang",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0626/",
    pages = "116--117"
}
@inproceedings{wang-etal-2008-raising,
    title = "Raising the Compatibility of Heterogeneous Annotations: A Case Study on",
    author = "Wang, Yue  and
      Yoshida, Kazuhiro  and
      Kim, Jin-Dong  and
      Saetre, Rune  and
      Tsujii, Jun{'}ichi",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0627/",
    pages = "118--119"
}
@inproceedings{feng-etal-2008-adaptive,
    title = "Adaptive Information Extraction for Complex Biomedical Tasks",
    author = "Feng, Donghui  and
      Burns, Gully  and
      Hovy, Eduard",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Cohen, Kevin Bretonnel  and
      Pestian, John  and
      Tsujii, Jun{'}ichi  and
      Webber, Bonnie",
    booktitle = "Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing",
    month = jun,
    year = "2008",
    address = "Columbus, Ohio",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/volume-fixes/W08-0628/",
    pages = "120--121"
}