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Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications (NLPBA/BioNLP)

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Recognizing Names in Biomedical Texts using Hidden Markov Model and SVM plus Sigmoid
GuoDong Zhou

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Using Argumentation to Retrieve Articles with Similar Citations from MEDLINE
Imad Tbahriti | Christine Chichester | Frédérique Lisacek | Patrick Ruch

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Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions
Sampo Pyysalo | Filip Ginter | Tapio Pahikkala | Jorma Boberg | Jouni Järvinen | Tapio Salakoski | Jeppe Koivula

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Discovering Patterns to Extract Protein-Protein Interactions from Full Biomedical Texts
Minlie Huang | Xiaoyan Zhu | Donald G. Payan | Kunbin Qu | Ming Li

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Zone Identification in Biology Articles as a Basis for Information Extraction
Yoko Mizuta | Nigel Collier

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Assessing the Correlation between Contextual Patterns and Biological Entity Tagging
M. Krallinger | M. Padrón | C. Blaschke | A. Valencia

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Event-Based Information Extraction for the Biomedical Domain: the Caderige Project
Erick Alphonse | Sophie Aubin | Philippe Bessières | Gilles Bisson | Thierry Hamon | Sandrine Lagarrigue | Adeline Nazarenko | Alain-Pierre Manine | Claire Nédellec | Mohamed Ould Abdel Vetah | Thierry Poibeau | Davy Weissenbacher

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Distributed Modules for Text Annotation and IE Applied to the Biomedical Domain
Harald Kirsch | Dietrich Rebholz-Schuhmann

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Support Vector Machine Approach to Extracting Gene References into Function from Biological Documents
Chih Lee | Wen-Juan Hou | Hsin-Hsi Chen

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Improving the Identification of Non-Anaphoric it using Support Vector Machines
José Carlos Clemente Litrán | Kenji Satou | Kentaro Torisawa

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Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information
Serguei Pakhomov | Anni Coden | Christopher Chute

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Classification from Full Text: A Comparison of Canonical Sections of Scientific Papers
Gail Sinclair | Bonnie Webber

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Introduction to the Bio-entity Recognition Task at JNLPBA
Nigel Collier | Jin-Dong Kim

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Incorporating Lexical Knowledge into Biomedical NE Recognition
Kyung-Mi Park | Seon-Ho Kim | Ki-Joong Lee | Do-Gil Lee | Hae-Chang Rim

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Annotating Multiple Types of Biomedical Entities: A Single Word Classification Approach
Chih Lee | Wen-Juan Hou | Hsin-Hsi Chen

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Named Entity Recognition in Biomedical Texts using an HMM Model
Shaojun Zhao

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Exploiting Context for Biomedical Entity Recognition: From Syntax to the Web
Jenny Finkel | Shipra Dingare | Huy Nguyen | Malvina Nissim | Christopher Manning | Gail Sinclair

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Adapting an NER-System for German to the Biomedical Domain
Marc Rössler

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Exploring Deep Knowledge Resources in Biomedical Name Recognition
GuoDong Zhou | Jian Su

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POSBIOTM-NER in the Shared Task of BioNLP/NLPBA2004
Yu Song | Eunju Kim | Gary Geunbae Lee | Byoung-kee Yi

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Biomedical Named Entity Recognition using Conditional Random Fields and Rich Feature Sets
Burr Settles