This paper describes our system for verifying statements with tables at SemEval-2021 Task 9. We developed a two-stage verifying system based on the latest table-based pre-trained model GraPPa. Multiple networks are devised to verify different types of statements in the competition dataset and an adaptive model ensembling technique is applied to ensemble models in both stages. A statement-slot-based symbolic operation module is also used in our system to further improve the performance and stability of the system. Our model achieves second place in the 3-way classification and fourth place in the 2-way classification evaluation. Several ablation experiments show the effectiveness of different modules proposed in this paper.

The active gene annotation corpus (AGAC) was developed to support knowledge discovery for drug repurposing. Based on the corpus, the AGAC track of the BioNLP Open Shared Tasks 2019 was organized, to facilitate cross-disciplinary collaboration across BioNLP and Pharmacoinformatics communities, for drug repurposing. The AGAC track consists of three subtasks: 1) named entity recognition, 2) thematic relation extraction, and 3) loss of function (LOF) / gain of function (GOF) topic classification. The AGAC track was participated by five teams, of which the performance are compared and analyzed. The the results revealed a substantial room for improvement in the design of the task, which we analyzed in terms of “imbalanced data”, “selective annotation” and “latent topic annotation”.

Sequence labeling of biomedical entities, e.g., side effects or phenotypes, was a long-term task in BioNLP and MedNLP communities. Thanks to effects made among these communities, adverse reaction NER has developed dramatically in recent years. As an illuminative application, to achieve knowledge discovery via the combination of the text mining result and bioinformatics idea shed lights on the pharmacological mechanism research.