The COVID-19 pandemic has spawned a diverse body of scientific literature that is challenging to navigate, stimulating interest in automated tools to help find useful knowledge. We pursue the construction of a knowledge base (KB) of mechanisms—a fundamental concept across the sciences, which encompasses activities, functions and causal relations, ranging from cellular processes to economic impacts. We extract this information from the natural language of scientific papers by developing a broad, unified schema that strikes a balance between relevance and breadth. We annotate a dataset of mechanisms with our schema and train a model to extract mechanism relations from papers. Our experiments demonstrate the utility of our KB in supporting interdisciplinary scientific search over COVID-19 literature, outperforming the prominent PubMed search in a study with clinical experts. Our search engine, dataset and code are publicly available.

We present an overview of the SCIVER shared task, presented at the 2nd Scholarly Document Processing (SDP) workshop at NAACL 2021. In this shared task, systems were provided a scientific claim and a corpus of research abstracts, and asked to identify which articles Support or Refute the claim as well as provide evidentiary sentences justifying those labels. 11 teams made a total of 14 submissions to the shared task leaderboard, leading to an improvement of more than +23 F1 on the primary task evaluation metric. In addition to surveying the participating systems, we provide several insights into modeling approaches to support continued progress and future research on the important and challenging task of scientific claim verification.

We introduce scientific claim verification, a new task to select abstracts from the research literature containing evidence that SUPPORTS or REFUTES a given scientific claim, and to identify rationales justifying each decision. To study this task, we construct SciFact, a dataset of 1.4K expert-written scientific claims paired with evidence-containing abstracts annotated with labels and rationales. We develop baseline models for SciFact, and demonstrate that simple domain adaptation techniques substantially improve performance compared to models trained on Wikipedia or political news. We show that our system is able to verify claims related to COVID-19 by identifying evidence from the CORD-19 corpus. Our experiments indicate that SciFact will provide a challenging testbed for the development of new systems designed to retrieve and reason over corpora containing specialized domain knowledge. Data and code for this new task are publicly available at https://github.com/allenai/scifact. A leaderboard and COVID-19 fact-checking demo are available at https://scifact.apps.allenai.org.

We examine the capabilities of a unified, multi-task framework for three information extraction tasks: named entity recognition, relation extraction, and event extraction. Our framework (called DyGIE++) accomplishes all tasks by enumerating, refining, and scoring text spans designed to capture local (within-sentence) and global (cross-sentence) context. Our framework achieves state-of-the-art results across all tasks, on four datasets from a variety of domains. We perform experiments comparing different techniques to construct span representations. Contextualized embeddings like BERT perform well at capturing relationships among entities in the same or adjacent sentences, while dynamic span graph updates model long-range cross-sentence relationships. For instance, propagating span representations via predicted coreference links can enable the model to disambiguate challenging entity mentions. Our code is publicly available at https://github.com/dwadden/dygiepp and can be easily adapted for new tasks or datasets.