Multi-label Diagnosis Classification of Swedish Discharge Summaries – ICD-10 Code Assignment Using KB-BERT

Sonja Remmer, Anastasios Lamproudis, Hercules Dalianis


Abstract
The International Classification of Diseases (ICD) is a system for systematically recording patients’ diagnoses. Clinicians or professional coders assign ICD codes to patients’ medical records to facilitate funding, research, and administration. In most health facilities, clinical coding is a manual, time-demanding task that is prone to errors. A tool that automatically assigns ICD codes to free-text clinical notes could save time and reduce erroneous coding. While many previous studies have focused on ICD coding, research on Swedish patient records is scarce. This study explored different approaches to pairing Swedish clinical notes with ICD codes. KB-BERT, a BERT model pre-trained on Swedish text, was compared to the traditional supervised learning models Support Vector Machines, Decision Trees, and K-nearest Neighbours used as the baseline. When considering ICD codes grouped into ten blocks, the KB-BERT was superior to the baseline models, obtaining an F1-micro of 0.80 and an F1-macro of 0.58. When considering the 263 full ICD codes, the KB-BERT was outperformed by all baseline models at an F1-micro and F1-macro of zero. Wilcoxon signed-rank tests showed that the performance differences between the KB-BERT and the baseline models were statistically significant.
Anthology ID:
2021.ranlp-1.130
Volume:
Proceedings of the International Conference on Recent Advances in Natural Language Processing (RANLP 2021)
Month:
September
Year:
2021
Address:
Held Online
Venue:
RANLP
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Publisher:
INCOMA Ltd.
Note:
Pages:
1158–1166
Language:
URL:
https://aclanthology.org/2021.ranlp-1.130
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Cite (ACL):
Sonja Remmer, Anastasios Lamproudis, and Hercules Dalianis. 2021. Multi-label Diagnosis Classification of Swedish Discharge Summaries – ICD-10 Code Assignment Using KB-BERT. In Proceedings of the International Conference on Recent Advances in Natural Language Processing (RANLP 2021), pages 1158–1166, Held Online. INCOMA Ltd..
Cite (Informal):
Multi-label Diagnosis Classification of Swedish Discharge Summaries – ICD-10 Code Assignment Using KB-BERT (Remmer et al., RANLP 2021)
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https://preview.aclanthology.org/update-css-js/2021.ranlp-1.130.pdf