Medical errors in clinical text pose significant risks to patient safety. The MEDIQA-CORR 2024 shared task focuses on detecting and correcting these errors across three subtasks: identifying the presence of an error, extracting the erroneous sentence, and generating a corrected sentence. In this paper, we present our approach that achieved top performance in all three subtasks. For the MS dataset, which contains subtle errors, we developed a retrieval-based system leveraging external medical question-answering datasets. For the UW dataset, reflecting more realistic clinical notes, we created a pipeline of modules to detect, localize, and correct errors. Both approaches utilized the DSPy framework for optimizing prompts and few-shot examples in large language model (LLM) based programs. Our results demonstrate the effectiveness of LLM based programs for medical error correction. However, our approach has limitations in addressing the full diversity of potential errors in medical documentation. We discuss the implications of our work and highlight future research directions to advance the robustness and applicability of medical error detection and correction systems.

This paper outlines our submission to the MEDIQA2024 Multilingual and Multimodal Medical Answer Generation (M3G) shared task. We report results for two standalone solutions under the English category of the task, the first involving two consecutive API calls to the Claude 3 Opus API and the second involving training an image-disease label joint embedding in the style of CLIP for image classification. These two solutions scored 1st and 2nd place respectively on the competition leaderboard, substantially outperforming the next best solution. Additionally, we discuss insights gained from post-competition experiments. While the performance of these two described solutions have significant room for improvement due to the difficulty of the shared task and the challenging nature of medical visual question answering in general, we identify the multi-stage LLM approach and the CLIP image classification approach as promising avenues for further investigation.

Retrieval-Augmented Generation (RAG) is an effective solution to supplement necessary knowledge to large language models (LLMs). Targeting its bottleneck of retriever performance, “generate-then-read” pipeline is proposed to replace the retrieval stage with generation from the LLM itself. Although promising, this research direction is underexplored and still cannot work in the scenario when source knowledge is given. In this paper, we formalize a general “A + B” framework with varying combinations of foundation models and types for systematic investigation. We explore the efficacy of the base and chat versions of LLMs and found their different functionalities suitable for generator A and reader B, respectively. Their combinations consistently outperform single models, especially in complex scenarios. Furthermore, we extend the application of the “A + B” framework to scenarios involving source documents through continuous learning, enabling the direct integration of external knowledge into LLMs. This approach not only facilitates effective acquisition of new knowledge but also addresses the challenges of safety and helpfulness post-adaptation. The paper underscores the versatility of the “A + B” framework, demonstrating its potential to enhance the practical application of LLMs across various domains.

Learning multi-task models for jointly detecting stance and verifying rumors poses challenges due to the need for training data of stance at post level and rumor veracity at claim level, which are difficult to obtain. To address this issue, we leverage large language models (LLMs) as the foundation annotators for the joint stance detection (SD) and rumor verification (RV) tasks, dubbed as JSDRV. We introduce a novel reinforcement tuning framework to enhance the joint predictive capabilities of LLM-based SD and RV components. Specifically, we devise a policy for selecting LLM-annotated data at the two levels, employing a hybrid reward mechanism to choose high-quality labels for effective LLM fine-tuning on both tasks. Results demonstrate that JSDRV improves the capabilities of LLMs in the joint tasks, not only outperforming state-of-the-art methods but also generalizing to non-LLMs accommodated as task models.

While extensive work has examined the explicit and implicit biases in large language models (LLMs), little research explores the relation between these two types of biases. This paper presents a comparative study of the explicit and implicit biases in LLMs grounded in social psychology. Social psychology distinguishes between explicit and implicit biases by whether the bias can be self-recognized by individuals. Aligning with this conceptualization, we propose a self-evaluation-based two-stage measurement of explicit and implicit biases within LLMs. First, the LLM is prompted to automatically fill templates with social targets to measure implicit bias toward these targets, where the bias is less likely to be self-recognized by the LLM. Then, the LLM is prompted to self-evaluate the templates filled by itself to measure explicit bias toward the same targets, where the bias is more likely to be self-recognized by the LLM. Experiments conducted on state-of-the-art LLMs reveal human-like inconsistency between explicit and implicit occupational gender biases. This work bridges a critical gap where prior studies concentrate solely on either explicit or implicit bias. We advocate that future work highlight the relation between explicit and implicit biases in LLMs.

Topic model is a statistical model that leverages unsupervised learning to mine hidden topics in document collections. The data sparsity and colloquialism of social texts make it difficult to accurately mine the topics. Traditional methods assume that there are only 0/1-state relationships between the two parties in the social networks, but the relationship status in real life is more complicated, such as continuously changing relationships with different degrees of intimacy. This paper proposes a continuous relational diffusion driven topic model (CRTM) with multi-grained text for microblog to realize the continuous representation of the relationship state and make up for the context and structural information lost by previous representation methods. Multi-grained text representation learning distinguishes the impact of formal and informal expression on the topics further and alleviates colloquialism problems. Specifically, based on the original social network, the reconstructed social network with continuous relationship status is obtained by using information diffusion technology. The graph convolution model is utilized to learn node embeddings through the new social network. Finally, the neural variational inference is applied to generate topics according to continuous relationships. We validate CRTM on three real datasets, and the experimental results show the effectiveness of the scheme.

Emotion recognition in conversation (ERC) is a field that aims to classify the emotion of each utterance within conversational contexts. This presents significant challenges, particularly in handling emotional ambiguity across various speakers and contextual factors. Existing ERC approaches have primarily focused on modeling conversational contexts while incorporating only superficial speaker attributes such as names, memories, and interactions. Recent works introduce personality as an essential deep speaker factor for emotion recognition, but relies on static personality, overlooking dynamic variability during conversations. Advances in personality psychology conceptualize personality as dynamic, proposing that personality states can change across situations. In this paper, we introduce ERC-DP, a novel model considering the dynamic personality of speakers during conversations. ERC-DP accounts for past utterances from the same speaker as situation impacting dynamic personality. It combines personality modeling with prompt design and fine-grained classification modules. Through a series of comprehensive experiments, ERC-DP demonstrates superior performance on three benchmark conversational datasets.

Multi-level implicit discourse relation recognition (MIDRR) is a challenging task to recognize the hierarchical discourse relations between the arguments with the absence of connectives. Recent methods tend to incorporate the static hierarchical structure containing all senses (defined as global hierarchy) into prompt tuning through a path prompt template or hierarchical label refining. Howerver, hierarchical modeling is independent of the verbalizer, resulting in a failure to effectively utilize the output probability distribution information of verbalizer. Besides, they ignore the utilization of the dynamic hierarchical label sequence for each instance (defined as local hierarchy) in prompt tuning. In this paper, we propose a global and local hierarchical prompt tuning (GLHPT) framework, which utilize prior knowledge of PLMs while better incorporating hierarchical information from two aspects. We leverage bottom-up propagated probability as the global hierarchy to inject it into multi-level verbalizer (MLV). Furthermore, we design a local hierarchy-driven contrastive learning (LHCL) to improve the probability distribution of MLV. Finally, our model achieves competitive results on two benchmacks.

Prompt-based fine-tuning (PF), by aligning with the training objective of pre-trained language models (PLMs), has shown improved performance on many few-shot natural language understanding (NLU) benchmarks. However, the word embedding space of PLMs exhibits anisotropy, which is called the representation degeneration problem. In this paper, we explore the self-similarity within the same context and identify the anisotropy of the feature embedding space in PF model. Given that the performance of PF models is dependent on feature embeddings, we inevitably pose the hypothesis: this anisotropy limits the performance of the PF models. Based on our experimental findings, we propose CLMA, a Contrastive Learning framework based on the [MASK] token and Answers, to alleviate the anisotropy in the embedding space. By combining our proposed counter-intuitive SSD, a Supervised Signal based on embedding Distance, our approach outperforms mainstream methods on the many NLU benchmarks in the few-shot experimental settings. In subsequent experiments, we analyze the capability of our method to capture deep semantic cues and the impact of the anisotropy in the feature embedding space on the performance of the PF model.

Jina Embeddings constitutes a set of high-performance sentence embedding models adept at translating textual inputs into numerical representations, capturing the semantics of the text. These models excel in applications like dense retrieval and semantic textual similarity. This paper details the development of Jina Embeddings, starting with the creation of high-quality pairwise and triplet datasets.It underlines the crucial role of data cleaning in dataset preparation, offers in-depth insights into the model training process, and concludes with a comprehensive performance evaluation using the Massive Text Embedding Benchmark (MTEB). Furthermore, to increase the model’s awareness of grammatical negation, we construct a novel training and evaluation dataset of negated and non-negated statements, which we make publicly available to the community.

This paper describes our submission to the MEDIQA-Chat 2023 shared task for automatic clinical note generation from doctor-patient conversations. We report results for two approaches: the first fine-tunes a pre-trained language model (PLM) on the shared task data, and the second uses few-shot in-context learning (ICL) with a large language model (LLM). Both achieve high performance as measured by automatic metrics (e.g. ROUGE, BERTScore) and ranked second and first, respectively, of all submissions to the shared task. Expert human scrutiny indicates that notes generated via the ICL-based approach with GPT-4 are preferred about as often as human-written notes, making it a promising path toward automated note generation from doctor-patient conversations.

Emotional support conversation (ESC) aims to provide emotional support (ES) to improve one’s mental state. Existing works stay at fitting grounded responses and responding strategies (e.g., question), which ignore the effect on ES and lack explicit goals to guide emotional positive transition. To this end, we introduce a new paradigm to formalize multi-turn ESC as a process of positive emotion elicitation. Addressing this task requires finely adjusting the elicitation intensity in ES as the conversation progresses while maintaining conversational goals like coherence. In this paper, we propose Supporter, a mixture-of-expert-based reinforcement learning model, and well design ES and dialogue coherence rewards to guide policy’s learning for responding. Experiments verify the superiority of Supporter in achieving positive emotion elicitation during responding while maintaining conversational goals including coherence.

The personalized dialogue explores the consistent relationship between dialogue generation and personality. Existing personalized dialogue agents model persona profiles from three resources: sparse or dense persona descriptions and dialogue histories. However, sparse structured persona attributes are explicit but uninformative, dense persona texts contain rich persona descriptions with much noise, and dialogue history query is both noisy and uninformative for persona modeling. In this work, we combine the advantages of the three resources to obtain a richer and more accurate persona. We design a Contrastive Latent Variable-based model (CLV) that clusters the dense persona descriptions into sparse categories, which are combined with the history query to generate personalized responses. Experimental results on Chinese and English datasets demonstrate our model’s superiority in personalization.

Empathetic conversation is psychologically supposed to be the result of conscious alignment and interaction between the cognition and affection of empathy. However, existing empathetic dialogue models usually consider only the affective aspect or treat cognition and affection in isolation, which limits the capability of empathetic response generation. In this work, we propose the CASE model for empathetic dialogue generation. It first builds upon a commonsense cognition graph and an emotional concept graph and then aligns the user’s cognition and affection at both the coarse-grained and fine-grained levels. Through automatic and manual evaluation, we demonstrate that CASE outperforms state-of-the-art baselines of empathetic dialogues and can generate more empathetic and informative responses.

Target-oriented dialogue guides the dialogue to a target quickly and smoothly. The latest approaches focus on global planning, which plans toward the target before the conversation instead of adopting a greedy strategy during the conversation. However, the global plan in existing works is fixed to certain turns by generating paths with certain nodes, which limits the optimization of turns and coherence of the target-oriented process. Toward flexible global planning, we propose to generate a global path as a natural language sentence instead of a sequence of nodes. With this path, the dialog is guided to the target with flexible turns of dialog. For model training, we also extract targetoriented dialogues from the chit-chat corpus with a knowledge graph. We conduct experiments on three datasets and simulate scenarios with and without user participation. The results show that our method has fewer turns, more coherent semantics, and a higher success rate in reaching the target than baselines.

In the target-oriented dialogue, the representation and achievement of targets are two interrelated essential issues. In current approaches, the target is typically supposed to be a single object represented as a word, which makes it relatively easy to achieve the target through dialogue with the help of a knowledge graph (KG). However, when the target has complex semantics, the existing knowledge graph is often incomplete in tracking complex semantic relations. This paper studies target-oriented dialog where the target is a topic sentence. We combine the methods of knowledge retrieval and relationship prediction to construct a context-related dynamic KG. On dynamic KG, we can track the implicit semantic paths in the speaker’s mind that may not exist in the existing KGs. In addition, we also designed a novel metric to evaluate the tracked path automatically. The experimental results show that our method can control the agent more logically and smoothly toward the complex target.

Event extraction aims to recognize pre-defined event triggers and arguments from texts, which suffer from the lack of high-quality annotations. In most NLP applications, involving a large scale of synthetic training data is a practical and effective approach to alleviate the problem of data scarcity. However, when applying to the task of event extraction, recent data augmentation methods often neglect the problem of grammatical incorrectness, structure misalignment, and semantic drifting, leading to unsatisfactory performances. In order to solve these problems, we propose a denoised structure-to-text augmentation framework for event extraction (DAEE), which generates additional training data through the knowledge-based structure-to-text generation model and selects the effective subset from the generated data iteratively with a deep reinforcement learning agent. Experimental results on several datasets demonstrate that the proposed method generates more diverse text representations for event extraction and achieves comparable results with the state-of-the-art.

Multi-document summarization (MDS) assumes a set of topic-related documents are provided as input. In practice, this document set is not always available; it would need to be retrieved given an information need, i.e. a question or topic statement, a setting we dub “open-domain’ MDS. We study this more challenging setting by formalizing the task and bootstrapping it using existing datasets, retrievers and summarizers. Via extensive automatic and human evaluation, we determine: (1) state-of-the-art summarizers suffer large reductions in performance when applied to open-domain MDS, (2) additional training in the open-domain setting can reduce this sensitivity to imperfect retrieval, and (3) summarizers are insensitive to the retrieval of duplicate documents and the order of retrieved documents, but highly sensitive to other errors, like the retrieval of irrelevant documents. Based on our results, we provide practical guidelines to enable future work on open-domain MDS, e.g. how to choose the number of retrieved documents to summarize. Our results suggest that new retrieval and summarization methods and annotated resources for training and evaluation are necessary for further progress in the open-domain setting.

Human conversations of recommendation naturally involve the shift of interests which can align the recommendation actions and conversation process to make accurate recommendations with rich explanations. However, existing conversational recommendation systems (CRS) ignore the advantage of user interest shift in connecting recommendation and conversation, which leads to an ineffective loose coupling structure of CRS. To address this issue, by modeling the recommendation actions as recommendation paths in a knowledge graph (KG), we propose DICR (Dual Imitation for Conversational Recommendation), which designs a dual imitation to explicitly align the recommendation paths and user interest shift paths in a recommendation module and a conversation module, respectively. By exchanging alignment signals, DICR achieves bidirectional promotion between recommendation and conversation modules and generates high-quality responses with accurate recommendations and coherent explanations. Experiments demonstrate that DICR outperforms the state-of-the-art models on recommendation and conversation performance with automatic, human, and novel explainability metrics.

We introduce the task of microblog opinion summarization (MOS) and share a dataset of 3100 gold-standard opinion summaries to facilitate research in this domain. The dataset contains summaries of tweets spanning a 2-year period and covers more topics than any other public Twitter summarization dataset. Summaries are abstractive in nature and have been created by journalists skilled in summarizing news articles following a template separating factual information (main story) from author opinions. Our method differs from previous work on generating gold-standard summaries from social media, which usually involves selecting representative posts and thus favors extractive summarization models. To showcase the dataset’s utility and challenges, we benchmark a range of abstractive and extractive state-of-the-art summarization models and achieve good performance, with the former outperforming the latter. We also show that fine-tuning is necessary to improve performance and investigate the benefits of using different sample sizes.

Conversational recommendation systems (CRS) aim to determine a goal item by sequentially tracking users’ interests through multi-turn conversation. In CRS, implicit patterns of user interest sequence guide the smooth transition of dialog utterances to the goal item. However, with the convenient explicit knowledge of knowledge graph (KG), existing KG-based CRS methods over-rely on the explicit separate KG links to model the user interests but ignore the rich goal-aware implicit interest sequence patterns in a dialog. In addition, interest sequence is also not fully used to generate smooth transited utterances. We propose CR-GIS with a parallel star framework. First, an interest-level star graph is designed to model the goal-aware implicit user interest sequence. Second, a hierarchical Star Transformer is designed to guide the multi-turn utterances generation with the interest-level star graph. Extensive experiments verify the effectiveness of CR-GIS in achieving more accurate recommended items with more fluent and coherent dialog utterances.

Target-oriented dialog aims to reach a global target through multi-turn conversation. The key to the task is the global planning towards the target, which flexibly guides the dialog concerning the context. However, existing target-oriented dialog works take a local and greedy strategy for response generation, where global planning is absent. In this work, we propose global planning for target-oriented dialog on a commonsense knowledge graph (KG). We design a global reinforcement learning with the planned paths to flexibly adjust the local response generation model towards the global target. We also propose a KG-based method to collect target-oriented samples automatically from the chit-chat corpus for model training. Experiments show that our method can reach the target with a higher success rate, fewer turns, and more coherent responses.

Though existing researches have achieved impressive results in controlled text generation, they focus mainly on single-attribute control. However, in applications like automatic comments, the topic and sentiment need to be controlled simultaneously. In this work, we propose a new framework for multi-attribute controlled text generation. To achieve this, we design a contrastive-generator that can effectively generate texts with more attributes. In order to increase the convergence of the text on the desired attributes, we adopt an external-discriminator to distinguish whether the generated text holds the desired attributes. Moreover, we propose top-n weighted decoding to further improve the relevance of texts to attributes. Automated evaluations and human evaluations show that our framework achieves remarkable controllability in multi-attribute generation while keeping the text fluent and diverse. It also yields promising performance on zero-shot generation.

Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex interactions between mentions of entities. Most existing methods are pipeline-based, requiring entities as input. However, jointly learning to extract entities and relations can improve performance and be more efficient due to shared parameters and training steps. In this paper, we develop a sequence-to-sequence approach, seq2rel, that can learn the subtasks of DocRE (entity extraction, coreference resolution and relation extraction) end-to-end, replacing a pipeline of task-specific components. Using a simple strategy we call entity hinting, we compare our approach to existing pipeline-based methods on several popular biomedical datasets, in some cases exceeding their performance. We also report the first end-to-end results on these datasets for future comparison. Finally, we demonstrate that, under our model, an end-to-end approach outperforms a pipeline-based approach. Our code, data and trained models are available at https://github.com/johngiorgi/seq2rel. An online demo is available at https://share.streamlit.io/johngiorgi/seq2rel/main/demo.py.

Large-scale language modeling and natural language prompting have demonstrated exciting capabilities for few and zero shot learning in NLP. However, translating these successes to specialized domains such as biomedicine remains challenging, due in part to biomedical NLP’s significant dataset debt – the technical costs associated with data that are not consistently documented or easily incorporated into popular machine learning frameworks at scale. To assess this debt, we crowdsourced curation of datasheets for 167 biomedical datasets. We find that only 13% of datasets are available via programmatic access and 30% lack any documentation on licensing and permitted reuse. Our dataset catalog is available at: https://tinyurl.com/bigbio22.

We consider event extraction in a generative manner with template-based conditional generation. Although there is a rising trend of casting the task of event extraction as a sequence generation problem with prompts, these generation-based methods have two significant challenges, including using suboptimal prompts and static event type information. In this paper, we propose a generative template-based event extraction method with dynamic prefix (GTEE-DynPref) by integrating context information with type-specific prefixes to learn a context-specific prefix for each context. Experimental results show that our model achieves competitive results with the state-of-the-art classification-based model OneIE on ACE 2005 and achieves the best performances on ERE.Additionally, our model is proven to be portable to new types of events effectively.

Developing models that can automatically generate detailed code explanation can greatly benefit software maintenance and programming education. However, existing code-to-text generation models often produce only high-level summaries of code that do not capture implementation-level choices essential for these scenarios. To fill in this gap, we propose the code explanation generation task. We first conducted a human study to identify the criteria for high-quality explanatory docstring for code. Based on that, we collected and refined a large-scale code docstring corpus and formulated automatic evaluation metrics that best match human assessments. Finally, we present a multi-stage fine-tuning strategy and baseline models for the task. Our experiments show that (1) our refined training dataset lets models achieve better performance in the explanation generation tasks compared to larger-scale unrefined data (15x larger), and (2) fine-tuned models can generate well-structured long docstrings comparable to human-written ones. We envision our training dataset, human-evaluation protocol, recommended metrics, and fine-tuning strategy can boost future code explanation research. The code and annotated data are available at https://github.com/subercui/CodeExp.

Although paths of user interests shift in knowledge graphs (KGs) can benefit conversational recommender systems (CRS), explicit reasoning on KGs has not been well considered in CRS, due to the complex of high-order and incomplete paths. We propose CRFR, which effectively does explicit multi-hop reasoning on KGs with a conversational context-based reinforcement learning model. Considering the incompleteness of KGs, instead of learning single complete reasoning path, CRFR flexibly learns multiple reasoning fragments which are likely contained in the complete paths of interests shift. A fragments-aware unified model is then designed to fuse the fragments information from item-oriented and concept-oriented KGs to enhance the CRS response with entities and words from the fragments. Extensive experiments demonstrate CRFR’s SOTA performance on recommendation, conversation and conversation interpretability.

Sentence embeddings are an important component of many natural language processing (NLP) systems. Like word embeddings, sentence embeddings are typically learned on large text corpora and then transferred to various downstream tasks, such as clustering and retrieval. Unlike word embeddings, the highest performing solutions for learning sentence embeddings require labelled data, limiting their usefulness to languages and domains where labelled data is abundant. In this paper, we present DeCLUTR: Deep Contrastive Learning for Unsupervised Textual Representations. Inspired by recent advances in deep metric learning (DML), we carefully design a self-supervised objective for learning universal sentence embeddings that does not require labelled training data. When used to extend the pretraining of transformer-based language models, our approach closes the performance gap between unsupervised and supervised pretraining for universal sentence encoders. Importantly, our experiments suggest that the quality of the learned embeddings scale with both the number of trainable parameters and the amount of unlabelled training data. Our code and pretrained models are publicly available and can be easily adapted to new domains or used to embed unseen text.

Collecting together microblogs representing opinions about the same topics within the same timeframe is useful to a number of different tasks and practitioners. A major question is how to evaluate the quality of such thematic clusters. Here we create a corpus of microblog clusters from three different domains and time windows and define the task of evaluating thematic coherence. We provide annotation guidelines and human annotations of thematic coherence by journalist experts. We subsequently investigate the efficacy of different automated evaluation metrics for the task. We consider a range of metrics including surface level metrics, ones for topic model coherence and text generation metrics (TGMs). While surface level metrics perform well, outperforming topic coherence metrics, they are not as consistent as TGMs. TGMs are more reliable than all other metrics considered for capturing thematic coherence in microblog clusters due to being less sensitive to the effect of time windows.

Aspect-level sentiment classification (ALSC) aims at identifying the sentiment polarity of a specified aspect in a sentence. ALSC is a practical setting in aspect-based sentiment analysis due to no opinion term labeling needed, but it fails to interpret why a sentiment polarity is derived for the aspect. To address this problem, recent works fine-tune pre-trained Transformer encoders for ALSC to extract an aspect-centric dependency tree that can locate the opinion words. However, the induced opinion words only provide an intuitive cue far below human-level interpretability. Besides, the pre-trained encoder tends to internalize an aspect’s intrinsic sentiment, causing sentiment bias and thus affecting model performance. In this paper, we propose a span-based anti-bias aspect representation learning framework. It first eliminates the sentiment bias in the aspect embedding by adversarial learning against aspects’ prior sentiment. Then, it aligns the distilled opinion candidates with the aspect by span-based dependency modeling to highlight the interpretable opinion terms. Our method achieves new state-of-the-art performance on five benchmarks, with the capability of unsupervised opinion extraction.

Relying on large pretrained language models such as Bidirectional Encoder Representations from Transformers (BERT) for encoding and adding a simple prediction layer has led to impressive performance in many clinical natural language processing (NLP) tasks. In this work, we present a novel extension to the Transformer architecture, by incorporating signature transform with the self-attention model. This architecture is added between embedding and prediction layers. Experiments on a new Swedish prescription data show the proposed architecture to be superior in two of the three information extraction tasks, comparing to baseline models. Finally, we evaluate two different embedding approaches between applying Multilingual BERT and translating the Swedish text to English then encode with a BERT model pretrained on clinical notes.

Understanding the pathogenesis of genetic diseases through different gene activities and their relations to relevant diseases is important for new drug discovery and drug repositioning. In this paper, we present a joint deep learning model in a multi-task learning paradigm for gene mutation-disease knowledge extraction, DeepGeneMD, which adapts the state-of-the-art hierarchical multi-task learning framework for joint inference on named entity recognition (NER) and relation extraction (RE) in the context of the AGAC (Active Gene Annotation Corpus) track at 2019 BioNLP Open Shared Tasks (BioNLP-OST). It simultaneously extracts gene mutation related activities, diseases, and their relations from the published scientific literature. In DeepGeneMD, we explore the task decomposition to create auxiliary subtasks so that more interactions between different learning subtasks can be leveraged in model training. Our model achieves the average F1 score of 0.45 on recognizing gene activities and disease entities, ranking 2nd in the AGAC NER task; and the average F1 score of 0.35 on extracting relations, ranking 1st in the AGAC RE task.

We present a system description of the OpenNMT Neural Machine Translation entry for the WNMT 2018 evaluation. In this work, we developed a heavily optimized NMT inference model targeting a high-performance CPU system. The final system uses a combination of four techniques, all of them lead to significant speed-ups in combination: (a) sequence distillation, (b) architecture modifications, (c) precomputation, particularly of vocabulary, and (d) CPU targeted quantization. This work achieves the fastest performance of the shared task, and led to the development of new features that have been integrated to OpenNMT and available to the community.

We present a system for time sensitive, topic based summarisation of the sentiment around target entities and topics in collections of tweets. We describe the main elements of the system and illustrate its functionality with two examples of sentiment analysis of topics related to the 2017 UK general election.

Existing target-specific sentiment recognition methods consider only a single target per tweet, and have been shown to miss nearly half of the actual targets mentioned. We present a corpus of UK election tweets, with an average of 3.09 entities per tweet and more than one type of sentiment in half of the tweets. This requires a method for multi-target specific sentiment recognition, which we develop by using the context around a target as well as syntactic dependencies involving the target. We present results of our method on both a benchmark corpus of single targets and the multi-target election corpus, showing state-of-the art performance in both corpora and outperforming previous approaches to multi-target sentiment task as well as deep learning models for single-target sentiment.