EXL Health AI Lab at MEDIQA-OE 2025: Evaluating Prompting Strategies with MedGemma for Medical Order Extraction
Abhinand Balachandran, Bavana Durgapraveen, Gowsikkan Sikkan Sudhagar, Vidhya Varshany J S, Sriram Rajkumar
Abstract
The accurate extraction of medical orders fromdoctor-patient conversations is a critical taskfor reducing clinical documentation burdensand ensuring patient safety. This paper detailsour team’s submission to the MEDIQA-OE-2025Shared Task. We investigate the performanceof MedGemma, a new domain-specific opensource language model, for structured order extraction. We systematically evaluate three distinct prompting paradigms: a straightforwardone-shot approach, a reasoning-focused ReActframework, and a multi-step agentic workflow.Our experiments reveal that while more complex frameworks like ReAct and agentic flowsare powerful, the simpler one-shot promptingmethod achieved the highest performance onthe official validation set. We posit that on manually annotated transcripts, complex reasoningchains can lead to “overthinking” and introduce noise, making a direct approach more robust and efficient. Our work provides valuableinsights into selecting appropriate promptingstrategies for clinical information extraction invaried data conditions.- Anthology ID:
- 2025.clinicalnlp-1.8
- Volume:
- Proceedings of the 7th Clinical Natural Language Processing Workshop
- Month:
- October
- Year:
- 2025
- Address:
- Virtual
- Editors:
- Asma Ben Abacha, Steven Bethard, Danielle Bitterman, Tristan Naumann, Kirk Roberts
- Venues:
- ClinicalNLP | WS
- SIG:
- Publisher:
- Association for Computational Linguistics
- Note:
- Pages:
- 68–74
- Language:
- URL:
- https://preview.aclanthology.org/retractions/2025.clinicalnlp-1.8/
- DOI:
- Cite (ACL):
- Abhinand Balachandran, Bavana Durgapraveen, Gowsikkan Sikkan Sudhagar, Vidhya Varshany J S, and Sriram Rajkumar. 2025. EXL Health AI Lab at MEDIQA-OE 2025: Evaluating Prompting Strategies with MedGemma for Medical Order Extraction. In Proceedings of the 7th Clinical Natural Language Processing Workshop, pages 68–74, Virtual. Association for Computational Linguistics.
- Cite (Informal):
- EXL Health AI Lab at MEDIQA-OE 2025: Evaluating Prompting Strategies with MedGemma for Medical Order Extraction (Balachandran et al., ClinicalNLP 2025)
- PDF:
- https://preview.aclanthology.org/retractions/2025.clinicalnlp-1.8.pdf