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Proceedings of BioNLP 2011 Workshop
Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber

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Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text
Philippe Thomas | Stefan Pietschmann | Illés Solt | Domonkos Tikk | Ulf Leser

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Unsupervised Entailment Detection between Dependency Graph Fragments
Marek Rei | Ted Briscoe

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Learning Phenotype Mapping for Integrating Large Genetic Data
Chun-Nan Hsu | Cheng-Ju Kuo | Congxing Cai | Sarah Pendergrass | Marylyn Ritchie | Jose Luis Ambite

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EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions
Sofie Van Landeghem | Filip Ginter | Yves Van de Peer | Tapio Salakoski

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Fast and simple semantic class assignment for biomedical text
K. Bretonnel Cohen | Thomas Christiansen | William Baumgartner Jr. | Karin Verspoor | Lawrence Hunter

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The Role of Information Extraction in the Design of a Document Triage Application for Biocuration
Sandeep Pokkunuri | Cartic Ramakrishnan | Ellen Riloff | Eduard Hovy | Gully Burns

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Medical Entity Recognition: A Comparaison of Semantic and Statistical Methods
Asma Ben Abacha | Pierre Zweigenbaum

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Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition
Yu Usami | Han-Cheol Cho | Naoaki Okazaki | Jun’ichi Tsujii

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Building frame-based corpus on the basis of ontological domain knowledge
He Tan | Rajaram Kaliyaperumal | Nirupama Benis

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Building a Coreference-Annotated Corpus from the Domain of Biochemistry
Riza Theresa Batista-Navarro | Sophia Ananiadou

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Towards Morphologically Annotated Corpus of Hospital Discharge Reports in Polish
Malgorzata Marciniak | Agnieszka Mykowiecka

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In Search of Protein Locations
Catherine Blake | Wu Zheng

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Automatic extraction of data deposition statements: where do the research results go?
Aurélie Névéol | W. John Wilbur | Zhiyong Lu

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From Pathways to Biomolecular Events: Opportunities and Challenges
Tomoko Ohta | Sampo Pyysalo | Jun’ichi Tsujii

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Towards Exhaustive Event Extraction for Protein Modifications
Sampo Pyysalo | Tomoko Ohta | Makoto Miwa | Jun’ichi Tsujii

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A Study on Dependency Tree Kernels for Automatic Extraction of Protein-Protein Interaction
Faisal Md. Chowdhury | Alberto Lavelli | Alessandro Moschitti

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Hypothesis and Evidence Extraction from Full-Text Scientific Journal Articles
Elizabeth White | K. Bretonnel Cohen | Larry Hunter

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SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation
Pontus Stenetorp | Sampo Pyysalo | Jun’ichi Tsujii

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Building Timelines from Narrative Clinical Records: Initial Results Based-on Deep Natural Language Understanding
Hyuckchul Jung | James Allen | Nate Blaylock | William de Beaumont | Lucian Galescu | Mary Swift

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Text Mining Techniques for Leveraging Positively Labeled Data
Lana Yeganova | Donald C. Comeau | Won Kim | W. John Wilbur

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Parsing Natural Language Queries for Life Science Knowledge
Tadayoshi Hara | Yuka Tateisi | Jin-Dong Kim | Yusuke Miyao

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Unlocking Medical Ontologies for Non-Ontology Experts
Shao Fen Liang | Donia Scott | Robert Stevens | Alan Rector

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Self-training and co-training in biomedical word sense disambiguation
Antonio Jimeno-Yepes | Alan Aronson

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Medstract - The Next Generation
Marc Verhagen | James Pustejovsky

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ThaiHerbMiner: A Thai Herbal Medicine Mining and Visualizing Tool
Choochart Haruechaiyasak | Jaruwat Pailai | Wasna Viratyosin | Rachada Kongkachandra