Mohamed Elgaar
2024
MedDec: A Dataset for Extracting Medical Decisions from Discharge Summaries
Mohamed Elgaar
|
Jiali Cheng
|
Nidhi Vakil
|
Hadi Amiri
|
Leo Anthony Celi
Findings of the Association for Computational Linguistics ACL 2024
Medical decisions directly impact individuals’ health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. In this paper, we develop a new dataset called “MedDec,” which contains clinical notes of eleven different phenotypes (diseases) annotated by ten types of medical decisions. We introduce the task of medical decision extraction, aiming to jointly extract and classify different types of medical decisions within clinical notes. We provide a comprehensive analysis of the dataset, develop a span detection model as a baseline for this task, evaluate recent span detection approaches, and employ a few metrics to measure the complexity of data samples. Our findings shed light on the complexities inherent in clinical decision extraction and enable future work in this area of research. The dataset and code are available through https://github.com/CLU-UML/MedDec.
2023
Ling-CL: Understanding NLP Models through Linguistic Curricula
Mohamed Elgaar
|
Hadi Amiri
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing
We employ a characterization of linguistic complexity from psycholinguistic and language acquisition research to develop data-driven curricula to understand the underlying linguistic knowledge that models learn to address NLP tasks. The novelty of our approach is in the development of linguistic curricula derived from data, existing knowledge about linguistic complexity, and model behavior during training. Through the evaluation of several benchmark NLP datasets, our curriculum learning approaches identify sets of linguistic metrics (indices) that inform the challenges and reasoning required to address each task. Our work will inform future research in all NLP areas, allowing linguistic complexity to be considered early in the research and development process. In addition, our work prompts an examination of gold standards and fair evaluation in NLP.
HuCurl: Human-induced Curriculum Discovery
Mohamed Elgaar
|
Hadi Amiri
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
We introduce the problem of curriculum discovery and describe a curriculum learning framework capable of discovering effective curricula in a curriculum space based on prior knowledge about sample difficulty. Using annotation entropy and loss as measures of difficulty, we show that (i): the top-performing discovered curricula for a given model and dataset are often non-monotonic as apposed to monotonic curricula in existing literature, (ii): the prevailing easy-to-hard or hard-to-easy transition curricula are often at the risk of underperforming, and (iii): the curricula discovered for smaller datasets and models perform well on larger datasets and models respectively. The proposed framework encompasses some of the existing curriculum learning approaches and can discover curricula that outperform them across several NLP tasks.
Search