Brian Hur


2024

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Is That the Right Dose? Investigating Generative Language Model Performance on Veterinary Prescription Text Analysis
Brian Hur | Lucy Lu Wang | Laura Hardefeldt | Meliha Yetisgen
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing

Optimizing antibiotic dosing recommendations is a vital aspect of antimicrobial stewardship (AMS) programs aimed at combating antimicrobial resistance (AMR), a significant public health concern, where inappropriate dosing contributes to the selection of AMR pathogens. A key challenge is the extraction of dosing information, which is embedded in free-text clinical records and necessitates numerical transformations. This paper assesses the utility of Large Language Models (LLMs) in extracting essential prescription attributes such as dose, duration, active ingredient, and indication. We evaluate methods to optimize LLMs on this task against a baseline BERT-based ensemble model. Our findings reveal that LLMs can achieve exceptional accuracy by combining probabilistic predictions with deterministic calculations, enforced through functional prompting, to ensure data types and execute necessary arithmetic. This research demonstrates new prospects for automating aspects of AMS when no training data is available.

2020

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Domain Adaptation and Instance Selection for Disease Syndrome Classification over Veterinary Clinical Notes
Brian Hur | Timothy Baldwin | Karin Verspoor | Laura Hardefeldt | James Gilkerson
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing

Identifying the reasons for antibiotic administration in veterinary records is a critical component of understanding antimicrobial usage patterns. This informs antimicrobial stewardship programs designed to fight antimicrobial resistance, a major health crisis affecting both humans and animals in which veterinarians have an important role to play. We propose a document classification approach to determine the reason for administration of a given drug, with particular focus on domain adaptation from one drug to another, and instance selection to minimize annotation effort.

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A Multi-pass Sieve for Clinical Concept Normalization
Yuxia Wang | Brian Hur | Karin Verspoor | Timothy Baldwin
Traitement Automatique des Langues, Volume 61, Numéro 2 : TAL et Santé [NLP and Health]