Rad-SpatialNet: A Frame-based Resource for Fine-Grained Spatial Relations in Radiology Reports

Surabhi Datta, Morgan Ulinski, Jordan Godfrey-Stovall, Shekhar Khanpara, Roy F. Riascos-Castaneda, Kirk Roberts

Abstract
This paper proposes a representation framework for encoding spatial language in radiology based on frame semantics. The framework is adopted from the existing SpatialNet representation in the general domain with the aim to generate more accurate representations of spatial language used by radiologists. We describe Rad-SpatialNet in detail along with illustrating the importance of incorporating domain knowledge in understanding the varied linguistic expressions involved in different radiological spatial relations. This work also constructs a corpus of 400 radiology reports of three examination types (chest X-rays, brain MRIs, and babygrams) annotated with fine-grained contextual information according to this schema. Spatial trigger expressions and elements corresponding to a spatial frame are annotated. We apply BERT-based models (BERT-Base and BERT- Large) to first extract the trigger terms (lexical units for a spatial frame) and then to identify the related frame elements. The results of BERT- Large are decent, with F1 of 77.89 for spatial trigger extraction and an overall F1 of 81.61 and 66.25 across all frame elements using gold and predicted spatial triggers respectively. This frame-based resource can be used to develop and evaluate more advanced natural language processing (NLP) methods for extracting fine-grained spatial information from radiology text in the future.
Anthology ID:
2020.lrec-1.274
Volume:
Proceedings of the Twelfth Language Resources and Evaluation Conference
Month:
May
Year:
2020
Address:
Marseille, France
Editors:
Nicoletta Calzolari, Frédéric Béchet, Philippe Blache, Khalid Choukri, Christopher Cieri, Thierry Declerck, Sara Goggi, Hitoshi Isahara, Bente Maegaard, Joseph Mariani, Hélène Mazo, Asuncion Moreno, Jan Odijk, Stelios Piperidis
Venue:
LREC
SIG:
Publisher:
European Language Resources Association
Note:
Pages:
2251–2260
Language:
English
URL:
https://aclanthology.org/2020.lrec-1.274
DOI:
Bibkey:
Cite (ACL):
Surabhi Datta, Morgan Ulinski, Jordan Godfrey-Stovall, Shekhar Khanpara, Roy F. Riascos-Castaneda, and Kirk Roberts. 2020. Rad-SpatialNet: A Frame-based Resource for Fine-Grained Spatial Relations in Radiology Reports. In Proceedings of the Twelfth Language Resources and Evaluation Conference, pages 2251–2260, Marseille, France. European Language Resources Association.
Cite (Informal):
Rad-SpatialNet: A Frame-based Resource for Fine-Grained Spatial Relations in Radiology Reports (Datta et al., LREC 2020)
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https://preview.aclanthology.org/nschneid-patch-2/2020.lrec-1.274.pdf
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