Richard Jackson
2022
Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework
Wonjin Yoon
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Richard Jackson
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Elliot Ford
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Vladimir Poroshin
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Jaewoo Kang
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: Industry Track
In order to assist the drug discovery/development process, pharmaceutical companies often apply biomedical NER and linking techniques over internal and public corpora. Decades of study of the field of BioNLP has produced a plethora of algorithms, systems and datasets. However, our experience has been that no single open source system meets all the requirements of a modern pharmaceutical company. In this work, we describe these requirements according to our experience of the industry, and present Kazu, a highly extensible, scalable open source framework designed to support BioNLP for the pharmaceutical sector. Kazu is a built around a computationally efficient version of the BERN2 NER model (TinyBERN2), and subsequently wraps several other BioNLP technologies into one coherent system.
2013
Finding Negative Symptoms of Schizophrenia in Patient Records
Genevieve Gorrell
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Angus Roberts
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Richard Jackson
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Robert Stewart
Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013
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Co-authors
- Genevieve Gorrell 1
- Angus Roberts 1
- Robert Stewart 1
- Wonjin Yoon 1
- Elliot Ford 1
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