To combat COVID-19, both clinicians and scientists need to digest the vast amount of relevant biomedical knowledge in literature to understand the disease mechanism and the related biological functions. We have developed a novel and comprehensive knowledge discovery framework, COVID-KG to extract fine-grained multimedia knowledge elements (entities, relations and events) from scientific literature. We then exploit the constructed multimedia knowledge graphs (KGs) for question answering and report generation, using drug repurposing as a case study. Our framework also provides detailed contextual sentences, subfigures, and knowledge subgraphs as evidence. All of the data, KGs, reports.

We present a new information extraction system that can automatically construct temporal event graphs from a collection of news documents from multiple sources, multiple languages (English and Spanish for our experiment), and multiple data modalities (speech, text, image and video). The system advances state-of-the-art from two aspects: (1) extending from sentence-level event extraction to cross-document cross-lingual cross-media event extraction, coreference resolution and temporal event tracking; (2) using human curated event schema library to match and enhance the extraction output. We have made the dockerlized system publicly available for research purpose at GitHub, with a demo video.

The growing popularity of Virtual Assistants poses new challenges for Entity Resolution, the task of linking mentions in text to their referent entities in a knowledge base. Specifically, in the shopping domain, customers tend to mention the entities implicitly (e.g., “organic milk”) rather than use the entity names explicitly, leading to a large number of candidate products. Meanwhile, for the same query, different customers may expect different results. For example, with “add milk to my cart”, a customer may refer to a certain product from his/her favorite brand, while some customers may want to re-order products they regularly purchase. Moreover, new customers may lack persistent shopping history, which requires us to enrich the connections between customers through products and their attributes. To address these issues, we propose a new framework that leverages personalized features to improve the accuracy of product ranking. We first build a cross-source heterogeneous knowledge graph from customer purchase history and product knowledge graph to jointly learn customer and product embeddings. After that, we incorporate product, customer, and history representations into a neural reranking model to predict which candidate is most likely to be purchased by a specific customer. Experiment results show that our model substantially improves the accuracy of the top ranked candidates by 24.6% compared to the state-of-the-art product search model.

Most existing joint neural models for Information Extraction (IE) use local task-specific classifiers to predict labels for individual instances (e.g., trigger, relation) regardless of their interactions. For example, a victim of a die event is likely to be a victim of an attack event in the same sentence. In order to capture such cross-subtask and cross-instance inter-dependencies, we propose a joint neural framework, OneIE, that aims to extract the globally optimal IE result as a graph from an input sentence. OneIE performs end-to-end IE in four stages: (1) Encoding a given sentence as contextualized word representations; (2) Identifying entity mentions and event triggers as nodes; (3) Computing label scores for all nodes and their pairwise links using local classifiers; (4) Searching for the globally optimal graph with a beam decoder. At the decoding stage, we incorporate global features to capture the cross-subtask and cross-instance interactions. Experiments show that adding global features improves the performance of our model and achieves new state of-the-art on all subtasks. In addition, as OneIE does not use any language-specific feature, we prove it can be easily applied to new languages or trained in a multilingual manner.

We present the first comprehensive, open source multimedia knowledge extraction system that takes a massive stream of unstructured, heterogeneous multimedia data from various sources and languages as input, and creates a coherent, structured knowledge base, indexing entities, relations, and events, following a rich, fine-grained ontology. Our system, GAIA, enables seamless search of complex graph queries, and retrieves multimedia evidence including text, images and videos. GAIA achieves top performance at the recent NIST TAC SM-KBP2019 evaluation. The system is publicly available at GitHub and DockerHub, with a narrated video that documents the system.

Event schemas can guide our understanding and ability to make predictions with respect to what might happen next. We propose a new Event Graph Schema, where two event types are connected through multiple paths involving entities that fill important roles in a coherent story. We then introduce Path Language Model, an auto-regressive language model trained on event-event paths, and select salient and coherent paths to probabilistically construct these graph schemas. We design two evaluation metrics, instance coverage and instance coherence, to evaluate the quality of graph schema induction, by checking when coherent event instances are covered by the schema graph. Intrinsic evaluations show that our approach is highly effective at inducing salient and coherent schemas. Extrinsic evaluations show the induced schema repository provides significant improvement to downstream end-to-end Information Extraction over a state-of-the-art joint neural extraction model, when used as additional global features to unfold instance graphs.

We propose a fine-grained entity typing model with a novel attention mechanism and a hybrid type classifier. We advance existing methods in two aspects: feature extraction and type prediction. To capture richer contextual information, we adopt contextualized word representations instead of fixed word embeddings used in previous work. In addition, we propose a two-step mention-aware attention mechanism to enable the model to focus on important words in mentions and contexts. We also present a hybrid classification method beyond binary relevance to exploit type inter-dependency with latent type representation. Instead of independently predicting each type, we predict a low-dimensional vector that encodes latent type features and reconstruct the type vector from this latent representation. Experiment results on multiple data sets show that our model significantly advances the state-of-the-art on fine-grained entity typing, obtaining up to 6.1% and 5.5% absolute gains in macro averaged F-score and micro averaged F-score respectively.

Unsupervised part of speech (POS) tagging is often framed as a clustering problem, but practical taggers need to ground their clusters as well. Grounding generally requires reference labeled data, a luxury a low-resource language might not have. In this work, we describe an approach for low-resource unsupervised POS tagging that yields fully grounded output and requires no labeled training data. We find the classic method of Brown et al. (1992) clusters well in our use case and employ a decipherment-based approach to grounding. This approach presumes a sequence of cluster IDs is a ‘ciphertext’ and seeks a POS tag-to-cluster ID mapping that will reveal the POS sequence. We show intrinsically that, despite the difficulty of the task, we obtain reasonable performance across a variety of languages. We also show extrinsically that incorporating our POS tagger into a name tagger leads to state-of-the-art tagging performance in Sinhalese and Kinyarwanda, two languages with nearly no labeled POS data available. We further demonstrate our tagger’s utility by incorporating it into a true ‘zero-resource’ variant of the MALOPA (Ammar et al., 2016) dependency parser model that removes the current reliance on multilingual resources and gold POS tags for new languages. Experiments show that including our tagger makes up much of the accuracy lost when gold POS tags are unavailable.

This paper demonstrates a state-of-the-art end-to-end multilingual (English, Russian, and Ukrainian) knowledge extraction system that can perform entity discovery and linking, relation extraction, event extraction, and coreference. It extracts and aggregates knowledge elements across multiple languages and documents as well as provides visualizations of the results along three dimensions: temporal (as displayed in an event timeline), spatial (as displayed in an event heatmap), and relational (as displayed in entity-relation networks). For our system to further support users’ analyses of causal sequences of events in complex situations, we also integrate a wide range of human moral value measures, independently derived from region-based survey, into the event heatmap. This system is publicly available as a docker container and a live demo.

Word embeddings are widely used on a variety of tasks and can substantially improve the performance. However, their quality is not consistent throughout the vocabulary due to the long-tail distribution of word frequency. Without sufficient contexts, rare word embeddings are usually less reliable than those of common words. However, current models typically trust all word embeddings equally regardless of their reliability and thus may introduce noise and hurt the performance. Since names often contain rare and uncommon words, this problem is particularly critical for name tagging. In this paper, we propose a novel reliability-aware name tagging model to tackle this issue. We design a set of word frequency-based reliability signals to indicate the quality of each word embedding. Guided by the reliability signals, the model is able to dynamically select and compose features such as word embedding and character-level representation using gating mechanisms. For example, if an input word is rare, the model relies less on its word embedding and assigns higher weights to its character and contextual features. Experiments on OntoNotes 5.0 show that our model outperforms the baseline model by 2.7% absolute gain in F-score. In cross-genre experiments on five genres in OntoNotes, our model improves the performance for most genre pairs and obtains up to 5% absolute F-score gain.

We propose a multi-lingual multi-task architecture to develop supervised models with a minimal amount of labeled data for sequence labeling. In this new architecture, we combine various transfer models using two layers of parameter sharing. On the first layer, we construct the basis of the architecture to provide universal word representation and feature extraction capability for all models. On the second level, we adopt different parameter sharing strategies for different transfer schemes. This architecture proves to be particularly effective for low-resource settings, when there are less than 200 training sentences for the target task. Using Name Tagging as a target task, our approach achieved 4.3%-50.5% absolute F-score gains compared to the mono-lingual single-task baseline model.

We demonstrate two annotation platforms that allow an English speaker to annotate names for any language without knowing the language. These platforms provided high-quality ’‘silver standard” annotations for low-resource language name taggers (Zhang et al., 2017) that achieved state-of-the-art performance on two surprise languages (Oromo and Tigrinya) at LoreHLT20171 and ten languages at TAC-KBP EDL2017 (Ji et al., 2017). We discuss strengths and limitations and compare other methods of creating silver- and gold-standard annotations using native speakers. We will make our tools publicly available for research use.

We demonstrate ELISA-EDL, a state-of-the-art re-trainable system to extract entity mentions from low-resource languages, link them to external English knowledge bases, and visualize locations related to disaster topics on a world heatmap. We make all of our data sets, resources and system training and testing APIs publicly available for research purpose.

Traditional Entity Linking (EL) technologies rely on rich structures and properties in the target knowledge base (KB). However, in many applications, the KB may be as simple and sparse as lists of names of the same type (e.g., lists of products). We call it as List-only Entity Linking problem. Fortunately, some mentions may have more cues for linking, which can be used as seed mentions to bridge other mentions and the uninformative entities. In this work, we select most linkable mentions as seed mentions and disambiguate other mentions by comparing them with the seed mentions rather than directly with the entities. Our experiments on linking mentions to seven automatically mined lists show promising results and demonstrate the effectiveness of our approach.

Current supervised name tagging approaches are inadequate for most low-resource languages due to the lack of annotated data and actionable linguistic knowledge. All supervised learning methods (including deep neural networks (DNN)) are sensitive to noise and thus they are not quite portable without massive clean annotations. We found that the F-scores of DNN-based name taggers drop rapidly (20%-30%) when we replace clean manual annotations with noisy annotations in the training data. We propose a new solution to incorporate many non-traditional language universal resources that are readily available but rarely explored in the Natural Language Processing (NLP) community, such as the World Atlas of Linguistic Structure, CIA names, PanLex and survival guides. We acquire and encode various types of non-traditional linguistic resources into a DNN name tagger. Experiments on three low-resource languages show that feeding linguistic knowledge can make DNN significantly more robust to noise, achieving 8%-22% absolute F-score gains on name tagging without using any human annotation