Li-Tzong Chen
2020
Cancer Registry Information Extraction via Transfer Learning
Yan-Jie Lin
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Hong-Jie Dai
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You-Chen Zhang
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Chung-Yang Wu
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Yu-Cheng Chang
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Pin-Jou Lu
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Chih-Jen Huang
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Yu-Tsang Wang
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Hui-Min Hsieh
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Kun-San Chao
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Tsang-Wu Liu
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I-Shou Chang
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Yi-Hsin Connie Yang
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Ti-Hao Wang
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Ko-Jiunn Liu
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Li-Tzong Chen
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Sheau-Fang Yang
Proceedings of the 3rd Clinical Natural Language Processing Workshop
A cancer registry is a critical and massive database for which various types of domain knowledge are needed and whose maintenance requires labor-intensive data curation. In order to facilitate the curation process for building a high-quality and integrated cancer registry database, we compiled a cross-hospital corpus and applied neural network methods to develop a natural language processing system for extracting cancer registry variables buried in unstructured pathology reports. The performance of the developed networks was compared with various baselines using standard micro-precision, recall and F-measure. Furthermore, we conducted experiments to study the feasibility of applying transfer learning to rapidly develop a well-performing system for processing reports from different sources that might be presented in different writing styles and formats. The results demonstrate that the transfer learning method enables us to develop a satisfactory system for a new hospital with only a few annotations and suggest more opportunities to reduce the burden of cancer registry curation.
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Co-authors
- Yan-Jie Lin 1
- Hong-Jie Dai 1
- You-Chen Zhang 1
- Chung-Yang Wu 1
- Yu-Cheng Chang 1
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