Large language models (LLMs) have achieved impressive performance but face high computational costs and latency, limiting their deployment in resource-constrained settings. In contrast, small-scale LLMs (SLMs) are more efficient yet struggle to capture evolving real-world knowledge. Retrieval-augmented generation (RAG) helps by integrating external knowledge, but imperfect retrieval can introduce distracting noise that misleads SLMs. We propose RoseRAG, a robust RAG framework for SLMs via Margin-aware Preference Optimization. RoseRAG employs multi-turn prompting for detailed reasoning, rejection sampling for high-quality explanations, and contrastive preference selection to refine responses by maximizing the likelihood gap between preferred and non-preferred outputs. By integrating these components into a margin-aware optimization process, RoseRAG robustly enhances the accuracy and reliability of SLMs for RAG applications. Extensive experiments on three open-domain question answering benchmarks indicate that our innovative RoseRAG surpasses state-of-the-art baselines significantly.

Reward modeling is crucial for aligning large language models (LLMs) with human preferences, especially in reinforcement learning from human feedback (RLHF). However, current reward models mainly produce scalar scores and struggle to incorporate critiques in a natural language format. We hypothesize that predicting both critiques and the scalar reward would improve reward modeling ability. Motivated by this, we propose Critic-RM, a framework that improves reward models using self-generated critiques without extra supervision. Critic-RM employs a two-stage process: generating and filtering high-quality critiques, followed by joint fine-tuning on reward prediction and critique generation. Experiments across benchmarks show that Critic-RM improves reward modeling accuracy by 3.7%-7.3% compared to standard reward models and LLM judges, demonstrating strong performance and data efficiency. Additional studies further validate the effectiveness of the generated critiques.

Hierarchical text classification (HTC) is a complex subtask under multi-label text classification, characterized by a hierarchical label taxonomy and data imbalance. The best-performing models aim to learn a static representation by combining document and hierarchical label information. However, the relevance of document sections can vary based on the hierarchy level, necessitating a dynamic document representation. To address this, we propose HiGen, a text-generation-based framework utilizing language models to encode dynamic text representations. We introduce a level-guided loss function to capture the relationship between text and label name semantics. Our approach incorporates a task-specific pretraining strategy, adapting the language model to in-domain knowledge and significantly enhancing performance for classes with limited examples. Furthermore, we present a new and valuable dataset called ENZYME, designed for HTC, which comprises articles from PubMed with the goal of predicting Enzyme Commission (EC) numbers. Through extensive experiments on the ENZYME dataset and the widely recognized WOS and NYT datasets, our methodology demonstrates superior performance, surpassing existing approaches while efficiently handling data and mitigating class imbalance. We release our code and dataset here: https://github.com/viditjain99/HiGen.

Developing effective biomedical retrieval models is important for excelling at knowledge-intensive biomedical tasks but still challenging due to the lack of sufficient publicly annotated biomedical data and computational resources. We present BMRetriever, a series of dense retrievers for enhancing biomedical retrieval via unsupervised pre-training on large biomedical corpora, followed by instruction fine-tuning on a combination of labeled datasets and synthetic pairs. Experiments on 5 biomedical tasks across 11 datasets verify BMRetriever’s efficacy on various biomedical applications. BMRetriever also exhibits strong parameter efficiency, with the 410M variant outperforming baselines up to 11.7 times larger, and the 2B variant matching the performance of models with over 5B parameters. The training data and model checkpoints are released at https://huggingface.co/BMRetriever to ensure transparency, reproducibility, and application to new domains.

Despite their improved capabilities in generation and reasoning, adapting large language models (LLMs) to the biomedical domain remains challenging due to their immense size and privacy concerns. In this study, we propose MedAdapter, a unified post-hoc adapter for test-time adaptation of LLMs towards biomedical applications. Instead of fine-tuning the entire LLM, MedAdapter effectively adapts the original model by fine-tuning only a small BERT-sized adapter to rank candidate solutions generated by LLMs. Experiments on four biomedical tasks across eight datasets demonstrate that MedAdapter effectively adapts both white-box and black-box LLMs in biomedical reasoning, achieving average performance improvements of 18.24% and 10.96%, respectively, without requiring extensive computational resources or sharing data with third parties. MedAdapter also yields enhanced performance when combined with train-time adaptation, highlighting a flexible and complementary solution to existing adaptation methods. Faced with the challenges of balancing model performance, computational resources, and data privacy, MedAdapter provides an efficient, privacy-preserving, cost-effective, and transparent solution for adapting LLMs to the biomedical domain.

Clinicians often rely on data engineers to retrieve complex patient information from electronic health record (EHR) systems, a process that is both inefficient and time-consuming. We propose EHRAgent, a large language model (LLM) agent empowered with accumulative domain knowledge and robust coding capability. EHRAgent enables autonomous code generation and execution to facilitate clinicians in directly interacting with EHRs using natural language. Specifically, we formulate a multi-tabular reasoning task based on EHRs as a tool-use planning process, efficiently decomposing a complex task into a sequence of manageable actions with external toolsets. We first inject relevant medical information to enable EHRAgent to effectively reason about the given query, identifying and extracting the required records from the appropriate tables. By integrating interactive coding and execution feedback, EHRAgent then effectively learns from error messages and iteratively improves its originally generated code. Experiments on three real-world EHR datasets show that EHRAgent outperforms the strongest baseline by up to 29.6% in success rate, verifying its strong capacity to tackle complex clinical tasks with minimal demonstrations.

Clinical natural language processing faces challenges like complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet, their direct deployment can lead to privacy issues and are constrained by resources. To address this challenge, we delve into synthetic clinical text generation with LLMs for clinical NLP tasks. We propose an innovative, resource-efficient approach, ClinGen, which infuses knowledge into the process. Our model involves clinical knowledge extraction and context-informed LLM prompting. Both clinical topics and writing styles are drawn from external domain-specific knowledge graphs and LLMs to guide data generation. Our extensive empirical study across 8 clinical NLP tasks and 18 datasets reveals that ClinGen consistently enhances performance across various tasks by 7.7%-8.7% on average, effectively aligning the distribution of real datasets and enriching the diversity of generated training instances.

Although Large Language Models (LLMs) exhibit remarkable adaptability across domains, these models often fall short in structured knowledge extraction tasks such as named entity recognition (NER). This paper explores an innovative, cost-efficient strategy to harness LLMs with modest NER capabilities for producing superior NER datasets. Our approach diverges from the basic class-conditional prompts by instructing LLMs to self-reflect on the specific domain, thereby generating domain-relevant attributes (such as category and emotions for movie reviews), which are utilized for creating attribute-rich training data. Furthermore, we preemptively generate entity terms and then develop NER context data around these entities, effectively bypassing the LLMs’ challenges with complex structures. Our experiments across both general and niche domains reveal significant performance enhancements over conventional data generation methods while being more cost-effective than existing alternatives.

Weakly-supervised learning (WSL) has shown promising results in addressing label scarcity on many NLP tasks, but manually designing a comprehensive, high-quality labeling rule set is tedious and difficult. We study interactive weakly-supervised learning—the problem of iteratively and automatically discovering novel labeling rules from data to improve the WSL model. Our proposed model, named PRBoost, achieves this goal via iterative prompt-based rule discovery and model boosting. It uses boosting to identify large-error instances and discovers candidate rules from them by prompting pre-trained LMs with rule templates. The candidate rules are judged by human experts, and the accepted rules are used to generate complementary weak labels and strengthen the current model. Experiments on four tasks show PRBoost outperforms state-of-the-art WSL baselines up to 7.1%, and bridges the gaps with fully supervised models.

Self-training achieves enormous success in various semi-supervised and weakly-supervised learning tasks. The method can be interpreted as a teacher-student framework, where the teacher generates pseudo-labels, and the student makes predictions. The two models are updated alternatingly. However, such a straightforward alternating update rule leads to training instability. This is because a small change in the teacher may result in a significant change in the student. To address this issue, we propose DRIFT, short for differentiable self-training, that treats teacher-student as a Stackelberg game. In this game, a leader is always in a more advantageous position than a follower. In self-training, the student contributes to the prediction performance, and the teacher controls the training process by generating pseudo-labels. Therefore, we treat the student as the leader and the teacher as the follower. The leader procures its advantage by acknowledging the follower’s strategy, which involves differentiable pseudo-labels and differentiable sample weights. Consequently, the leader-follower interaction can be effectively captured via Stackelberg gradient, obtained by differentiating the follower’s strategy. Experimental results on semi- and weakly-supervised classification and named entity recognition tasks show that our model outperforms existing approaches by large margins.

Although fine-tuning pre-trained language models (PLMs) renders strong performance in many NLP tasks, it relies on excessive labeled data. Recently, researchers have resorted to active fine-tuning for enhancing the label efficiency of PLM fine-tuning, but existing methods of this type usually ignore the potential of unlabeled data. We develop AcTune, a new framework that improves the label efficiency of active PLM fine-tuning by unleashing the power of unlabeled data via self-training. AcTune switches between data annotation and model self-training based on uncertainty: the unlabeled samples of high-uncertainty are selected for annotation, while the ones from low-uncertainty regions are used for model self-training. Additionally, we design (1) a region-aware sampling strategy to avoid redundant samples when querying annotations and (2) a momentum-based memory bank to dynamically aggregate the model’s pseudo labels to suppress label noise in self-training. Experiments on 6 text classification datasets show that AcTune outperforms the strongest active learning and self-training baselines and improves the label efficiency of PLM fine-tuning by 56.2% on average. Our implementation is available at https://github.com/yueyu1030/actune.