Regulatory documents are rich in nuanced terminology and specialized semantics. FRAG systems: Frozen retrieval-augmented generators utilizing pre-trained (or, frozen) components face consequent challenges with both retriever and answering performance. We present a system that adapts the retriever performance to the target domain using a multi-stage tuning (MST) strategy. Our retrieval approach, called MST-R (a) first fine-tunes encoders used in vector stores using hard negative mining, (b) then uses a hybrid retriever, combining sparse and dense retrievers using reciprocal rank fusion, and then (c) adapts the cross-attention encoder by fine-tuning only the top-k retrieved results. We benchmark the system performance on the dataset released for the RIRAG challenge (as part of the RegNLP workshop at COLING 2025). We achieve significant performance gains obtaining a top rank on the RegNLP challenge leaderboard. We also show that a trivial answering approach *games* the RePASs metric outscoring all baselines and a pre-trained Llama model. Analyzing this anomaly, we present important takeaways for future research. We also release our [code base](https://github.com/Indic-aiDias/MST-R)