Named entity recognition (NER) in clinical documentation is often hindered by the use of highly specialised terminology, variation in language used to express medical findings and general scarcity of high-quality data available for training. This short paper compares a Conditional Random Fields model to the previously established dictionary-based approach and evaluates its ability to extract information from a small corpus of annotated pathology reports. The results suggest that including token descriptors as well as contextual features significantly improves precision on several concept categories while maintaining the same level of recall.