Jeffrey Tan


Fixing paper assignments

  1. Please select all papers that belong to the same person.
  2. Indicate below which author they should be assigned to.
Provide a valid ORCID iD here. This will be used to match future papers to this author.
Provide the name of the school or the university where the author has received or will receive their highest degree (e.g., Ph.D. institution for researchers, or current affiliation for students). This will be used to form the new author page ID, if needed.

TODO: "submit" and "cancel" buttons here


2023

pdf bib
GersteinLab at MEDIQA-Chat 2023: Clinical Note Summarization from Doctor-Patient Conversations through Fine-tuning and In-context Learning
Xiangru Tang | Andrew Tran | Jeffrey Tan | Mark Gerstein
Proceedings of the 5th Clinical Natural Language Processing Workshop

This paper presents our contribution to the MEDIQA-2023 Dialogue2Note shared task, encompassing both subtask A and subtask B. We approach the task as a dialogue summarization problem and implement two distinct pipelines: (a) a fine-tuning of a pre-trained dialogue summarization model and GPT-3, and (b) few-shot in-context learning (ICL) using a large language model, GPT-4. Both methods achieve excellent results in terms of ROUGE-1 F1, BERTScore F1 (deberta-xlarge-mnli), and BLEURT, with scores of 0.4011, 0.7058, and 0.5421, respectively. Additionally, we predict the associated section headers using RoBERTa and SciBERT based classification models. Our team ranked fourth among all teams, while each team is allowed to submit three runs as part of their submission. We also utilize expert annotations to demonstrate that the notes generated through the ICL GPT-4 are better than all other baselines. The code for our submission is available.