Vision-Language Models (VLMs) have achieved remarkable progress in complex visual understanding across scientific and reasoning tasks. While performance benchmarking has advanced our understanding of these capabilities, the critical dimension of uncertainty quantification has received insufficient attention. Therefore, unlike prior conformal prediction studies that focused on limited settings, we conduct a comprehensive uncertainty benchmarking study, evaluating 18 state-of-the-art VLMs (open and closed-source) across 6 multimodal datasets with 3 distinct scoring functions. For closed-source models lacking token-level logprob access, we develop and validate instruction-guided likelihood proxies. Our findings demonstrate that larger models consistently exhibit better uncertainty quantification; models that know more also know better what they don’t know. More certain models achieve higher accuracy, while mathematical and reasoning tasks elicit poorer uncertainty performance across all models compared to other domains. This work establishes a foundation for reliable uncertainty evaluation in multimodal systems.

Encoder transformer models compress information from all tokens in a sequence into a single [CLS] token to represent global context. This approach risks diluting fine-grained or hierarchical features, leading to information loss in downstream tasks where local patterns are important. To remedy this, we propose a lightweight architectural enhancement: an inception-style 1-D convolution module that sits on top of the transformer layer and augments token representations with multi-scale local features. This enriched feature space is then processed by a self-attention layer that dynamically weights tokens based on their task relevance. Experiments on five diverse tasks show that our framework consistently improves general-purpose, domain-specific, and multilingual models, outperforming baselines by 1% to 14% while maintaining efficiency. Ablation studies show that multi-scale convolution performs better than any single kernel and that the self-attention layer is critical for performance.