Code localization–identifying precisely where in a codebase changes need to be made–is a fundamental yet challenging task in software maintenance. Existing approaches struggle to efficiently navigate complex codebases when identifying relevant code snippets.The challenge lies in bridging natural language problem descriptions with the target code elements, often requiring reasoning across hierarchical structures and multiple dependencies.We introduce LocAgent, a framework that addresses code localization through a graph-guided agent.By parsing codebases into directed heterogeneous graphs, LocAgent creates a lightweight representation that captures code structures and their dependencies, enabling LLM agents to effectively search and locate relevant entities through powerful multi-hop reasoning.Experimental results on real-world benchmarks demonstrate that our approach significantly enhances accuracy in code localization.Notably, our method with the fine-tuned Qwen-2.5-Coder-Instruct-32B model achieves comparable results to SOTA proprietary models at greatly reduced cost (approximately 86% reduction), reaching up to 92.7% accuracy on file-level localization while improving downstream GitHub issue resolution success rates by 12% for multiple attempts (Pass@10). Our code is available at https://github.com/gersteinlab/LocAgent.

Recent large Pre-trained Language Models (PLMs) usually only provide users with the inference APIs, namely the emerging Model-as-a-Service (MaaS) setting. To adapt MaaS PLMs to downstream tasks without accessing their parameters and gradients, some existing methods focus on the output-side adaptation of PLMs, viewing the PLM as an encoder and then optimizing a task-specific decoder for decoding the output hidden states and class scores of the PLM. Despite the effectiveness of these methods, they only use a single prompt to query PLMs for decoding, leading to a heavy reliance on the quality of the adopted prompt. In this paper, we propose a simple yet effective Multi-Prompting Decoder (MPD) framework for MaaS adaptation. The core idea is to query PLMs with multiple different prompts for each sample, thereby obtaining multiple output hidden states and class scores from PLMs for subsequent decoding. Such multi-prompting decoding paradigm can simultaneously mitigate reliance on the quality of a single prompt, alleviate the issue of data scarcity under the few-shot setting, and provide richer knowledge extracted from PLMs. Specifically, we propose two decoding strategies: multi-prompting decoding with optimal transport for hidden states and calibrated decoding for class scores. Extensive experiments demonstrate that our method achieves new state-of-the-art results on multiple natural language understanding datasets under the few-shot setting.