Large Language Models (LLMs) have significantly transformed our daily life and established a new paradigm in natural language processing (NLP). However, the predominant pretraining of LLMs on extensive web-based texts remains insufficient for advanced scientific discovery, particularly in chemistry. The scarcity of specialized chemistry data, coupled with the complexity of multi-modal data such as 2D graph, 3D structure and spectrum, present distinct challenges. Although several studies have reviewed Pretrained Language Models (PLMs) in chemistry, there is a conspicuous absence of a systematic survey specifically focused on chemistry-oriented LLMs. In this paper, we outline methodologies for incorporating domain-specific chemistry knowledge and multi-modal information into LLMs, we also conceptualize chemistry LLMs as agents using chemistry tools and investigate their potential to accelerate scientific research. Additionally, we conclude the existing benchmarks to evaluate chemistry ability of LLMs. Finally, we critically examine the current challenges and identify promising directions for future research. Through this comprehensive survey, we aim to assist researchers in staying at the forefront of developments in chemistry LLMs and to inspire innovative applications in the field.

Existing alignment methods share a common topology of information flow, where reward information is collected from humans, modeled with preference learning, and used to tune language models. However, this shared topology has not been systematically characterized, nor have its alternatives been thoroughly explored, leaving the problems of low data efficiency and unreliable generalization unaddressed. As a solution, we introduce a theory of **reward generalization** in reinforcement learning from human feedback (RLHF), focusing on the **topology of information flow** at both macro and micro levels. At the macro level, we portray the RLHF information flow as an autoencoding process over behavior distributions, formalizing the RLHF objective of distributional consistency between human preference and model behavior. At the micro level, we present *induced Bayesian networks* to model the impact of dataset topologies on reward generalization. Combining analysis on both levels, we propose **reward modeling from tree-structured preference information**. It is shown to reduce reward uncertainty by up to 𝛩(log n/loglog n) times compared to baselines, where n is the dataset size. Validation on three NLP tasks shows that it achieves an average win rate of 65% against baselines, thus improving reward generalization *for free* via topology design, while *reducing* the amount of data requiring annotation.

Text summarization tasks commonly employ Pre-trained Language Models (PLMs) to fit diverse standard datasets. While these PLMs excel in automatic evaluations, they frequently underperform in human evaluations, indicating a deviation between their generated summaries and human summarization preferences. This discrepancy is likely due to the low quality of fine-tuning datasets and the limited availability of high-quality human-annotated data that reflect true human preference. To address this challenge, we introduce a novel human summarization preference alignment framework AlignSum. This framework consists of three parts: Firstly, we construct a Data Pymarid with extractive, abstractive, and human-annotated summary data. Secondly, we conduct the Gaussian Resampling to remove summaries with extreme lengths. Finally, we implement the two-stage hierarchical fine-tuning with Data Pymarid after Gaussian Resampling. We apply AlignSum to PLMs on the human-annotated CNN/DailyMail and BBC XSum datasets. Experiments show that with AlignSum, PLMs like BART-Large surpass 175B GPT-3 in both automatic and human evaluations. This demonstrates that AlignSum significantly enhances the alignment of language models with human summarization preferences.