@inproceedings{ziletti-dambrosi-2024-retrieval,
    title = "Retrieval augmented text-to-{SQL} generation for epidemiological question answering using electronic health records",
    author = "Ziletti, Angelo  and
      DAmbrosi, Leonardo",
    editor = "Naumann, Tristan  and
      Ben Abacha, Asma  and
      Bethard, Steven  and
      Roberts, Kirk  and
      Bitterman, Danielle",
    booktitle = "Proceedings of the 6th Clinical Natural Language Processing Workshop",
    month = jun,
    year = "2024",
    address = "Mexico City, Mexico",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/jlcl-multiple-ingestion/2024.clinicalnlp-1.4/",
    doi = "10.18653/v1/2024.clinicalnlp-1.4",
    pages = "47--53",
    abstract = "Electronic health records (EHR) and claims data are rich sources of real-world data that reflect patient health status and healthcare utilization. Querying these databases to answer epidemiological questions is challenging due to the intricacy of medical terminology and the need for complex SQL queries. Here, we introduce an end-to-end methodology that combines text-to-SQL generation with retrieval augmented generation (RAG) to answer epidemiological questions using EHR and claims data. We show that our approach, which integrates a medical coding step into the text-to-SQL process, significantly improves the performance over simple prompting. Our findings indicate that although current language models are not yet sufficiently accurate for unsupervised use, RAG offers a promising direction for improving their capabilities, as shown in a realistic industry setting."
}