We describe a simple procedure for the automatic creation of word-level alignments between printed documents and their respective full-text versions. The procedure is unsupervised, uses standard, off-the-shelf components only, and reaches an F-score of 85.01 in the basic setup and up to 86.63 when using pre- and post-processing. Potential areas of application are manual database curation (incl. document triage) and biomedical expression OCR.
pyMMAX2 is an API for processing MMAX2 stand-off annotation data in Python. It provides a lightweight basis for the development of code which opens up the Java- and XML-based ecosystem of MMAX2 for more recent, Python-based NLP and data science methods. While pyMMAX2 is pure Python, and most functionality is implemented from scratch, the API re-uses the complex implementation of the essential business logic for MMAX2 annotation schemes by interfacing with the original MMAX2 Java libraries. pyMMAX2 is available for download at http://github.com/nlpAThits/pyMMAX2.
We introduce a novel scientific document processing task for making previously inaccessible information in printed paper documents available to automatic processing. We describe our data set of scanned documents and data records from the biological database SABIO-RK, provide a definition of the task, and report findings from preliminary experiments. Rigorous evaluation proved challenging due to lack of gold-standard data and a difficult notion of correctness. Qualitative inspection of results, however, showed the feasibility and usefulness of the task
We present a very simple, unsupervised method for the pairwise matching of documents from heterogeneous collections. We demonstrate our method with the Concept-Project matching task, which is a binary classification task involving pairs of documents from heterogeneous collections. Although our method only employs standard resources without any domain- or task-specific modifications, it clearly outperforms the more complex system of the original authors. In addition, our method is transparent, because it provides explicit information about how a similarity score was computed, and efficient, because it is based on the aggregation of (pre-computable) word-level similarities.
We present WOMBAT, a Python tool which supports NLP practitioners in accessing word embeddings from code. WOMBAT addresses common research problems, including unified access, scaling, and robust and reproducible preprocessing. Code that uses WOMBAT for accessing word embeddings is not only cleaner, more readable, and easier to reuse, but also much more efficient than code using standard in-memory methods: a Python script using WOMBAT for evaluating seven large word embedding collections (8.7M embedding vectors in total) on a simple SemEval sentence similarity task involving 250 raw sentence pairs completes in under ten seconds end-to-end on a standard notebook computer.
In this paper we investigate the coverage of the two knowledge sources WordNet and Wikipedia for the task of bridging resolution. We report on an annotation experiment which yielded pairs of bridging anaphors and their antecedents in spoken multi-party dialog. Manual inspection of the two knowledge sources showed that, with some interesting exceptions, Wikipedia is superior to WordNet when it comes to the coverage of information necessary to resolve the bridging anaphors in our data set. We further describe a simple procedure for the automatic extraction of the required knowledge from Wikipedia by means of an API, and discuss some of the implications of the procedures performance.