Artificial Intelligence (AI), along with the recent progress in biomedical language understanding, is gradually offering great promise for medical practice. With the development of biomedical language understanding benchmarks, AI applications are widely used in the medical field. However, most benchmarks are limited to English, which makes it challenging to replicate many of the successes in English for other languages. To facilitate research in this direction, we collect real-world biomedical data and present the first Chinese Biomedical Language Understanding Evaluation (CBLUE) benchmark: a collection of natural language understanding tasks including named entity recognition, information extraction, clinical diagnosis normalization, single-sentence/sentence-pair classification, and an associated online platform for model evaluation, comparison, and analysis. To establish evaluation on these tasks, we report empirical results with the current 11 pre-trained Chinese models, and experimental results show that state-of-the-art neural models perform by far worse than the human ceiling.
Early exiting allows instances to exit at different layers according to the estimation of difficulty.Previous works usually adopt heuristic metrics such as the entropy of internal outputs to measure instance difficulty, which suffers from generalization and threshold-tuning. In contrast, learning to exit, or learning to predict instance difficulty is a more appealing way. Though some effort has been devoted to employing such “learn-to-exit” modules, it is still unknown whether and how well the instance difficulty can be learned. As a response, we first conduct experiments on the learnability of instance difficulty, which demonstrates that modern neural models perform poorly on predicting instance difficulty. Based on this observation, we propose a simple-yet-effective Hash-based Early Exiting approach HashEE) that replaces the learn-to-exit modules with hash functions to assign each token to a fixed exiting layer. Different from previous methods, HashEE requires no internal classifiers nor extra parameters, and therefore is more efficient.HashEE can be used in various tasks (including language understanding and generation) and model architectures such as seq2seq models. Experimental results on classification, regression, and generation tasks demonstrate that HashEE can achieve higher performance with fewer FLOPs and inference time compared with previous state-of-the-art early exiting methods.
Large scale pre-training models have been widely used in named entity recognition (NER) tasks. However, model ensemble through parameter averaging or voting can not give full play to the differentiation advantages of different models, especially in the open domain. This paper describes our NER system in the SemEval 2022 task11: MultiCoNER. We proposed an effective system to adaptively ensemble pre-trained language models by a Transformer layer. By assigning different weights to each model for different inputs, we adopted the Transformer layer to integrate the advantages of diverse models effectively. Experimental results show that our method achieves superior performances in Farsi and Dutch.
In this work, we propose a novel framework, Gradient Aligned Mutual Learning BERT (GAML-BERT), for improving the early exiting of BERT. GAML-BERT’s contributions are two-fold. We conduct a set of pilot experiments, which shows that mutual knowledge distillation between a shallow exit and a deep exit leads to better performances for both. From this observation, we use mutual learning to improve BERT’s early exiting performances, that is, we ask each exit of a multi-exit BERT to distill knowledge from each other. Second, we propose GA, a novel training method that aligns the gradients from knowledge distillation to cross-entropy losses. Extensive experiments are conducted on the GLUE benchmark, which shows that our GAML-BERT can significantly outperform the state-of-the-art (SOTA) BERT early exiting methods.
In this article, we describe our systems for the MEDIQA 2021 Shared Tasks. First, we will describe our method for the second task, Multi-Answer Summarization (MAS). For extractive summarization, two series of methods are applied. The first one follows (CITATION). First a RoBERTa model is first applied to give a local ranking of the candidate sentences. Then a Markov Chain model is applied to evaluate the sentences globally. The second method applies cross-sentence contextualization to improve the local ranking and discard the global ranking step. Our methods achieve the 1st Place in the MAS task. For the question summarization (QS) and radiology report summarization (RRS) tasks, we explore how end-to-end pre-trained seq2seq model perform. A series of tricks for improving the fine-tuning performances are validated.
In developing an online question-answering system for the medical domains, natural language inference (NLI) models play a central role in question matching and intention detection. However, which models are best for our datasets? Manually selecting or tuning a model is time-consuming. Thus we experiment with automatically optimizing the model architectures on the task at hand via neural architecture search (NAS). First, we formulate a novel architecture search space based on the previous NAS literature, supporting cross-sentence attention (cross-attn) modeling. Second, we propose to modify the ENAS method to accelerate and stabilize the search results. We conduct extensive experiments on our two medical NLI tasks. Results show that our system can easily outperform the classical baseline models. We compare different NAS methods and demonstrate our approach provides the best results.
In this paper, we integrate span-related information into pre-trained encoder for entity relation extraction task. Instead of using general-purpose sentence encoder (e.g., existing universal pre-trained models), we introduce a span encoder and a span pair encoder to the pre-training network, which makes it easier to import intra-span and inter-span information into the pre-trained model. To learn the encoders, we devise three customized pre-training objectives from different perspectives, which target on tokens, spans, and span pairs. In particular, a span encoder is trained to recover a random shuffling of tokens in a span, and a span pair encoder is trained to predict positive pairs that are from the same sentences and negative pairs that are from different sentences using contrastive loss. Experimental results show that the proposed pre-training method outperforms distantly supervised pre-training, and achieves promising performance on two entity relation extraction benchmark datasets (ACE05, SciERC).
This paper describes the models designated for the MEDIQA 2019 shared tasks by the team PANLP. We take advantages of the recent advances in pre-trained bidirectional transformer language models such as BERT (Devlin et al., 2018) and MT-DNN (Liu et al., 2019b). We find that pre-trained language models can significantly outperform traditional deep learning models. Transfer learning from the NLI task to the RQE task is also experimented, which proves to be useful in improving the results of fine-tuning MT-DNN large. A knowledge distillation process is implemented, to distill the knowledge contained in a set of models and transfer it into an single model, whose performance turns out to be comparable with that obtained by the ensemble of that set of models. Finally, for test submissions, model ensemble and a re-ranking process are implemented to boost the performances. Our models participated in all three tasks and ranked the 1st place for the RQE task, and the 2nd place for the NLI task, and also the 2nd place for the QA task.
To solve the shared tasks of COIN: COmmonsense INference in Natural Language Processing) Workshop in , we need explore the impact of knowledge representation in modeling commonsense knowledge to boost performance of machine reading comprehension beyond simple text matching. There are two approaches to represent knowledge in the low-dimensional space. The first is to leverage large-scale unsupervised text corpus to train fixed or contextual language representations. The second approach is to explicitly express knowledge into a knowledge graph (KG), and then fit a model to represent the facts in the KG. We have experimented both (a) improving the fine-tuning of pre-trained language models on a task with a small dataset size, by leveraging datasets of similar tasks; and (b) incorporating the distributional representations of a KG onto the representations of pre-trained language models, via simply concatenation or multi-head attention. We find out that: (a) for task 1, first fine-tuning on larger datasets like RACE (Lai et al., 2017) and SWAG (Zellersetal.,2018), and then fine-tuning on the target task improve the performance significantly; (b) for task 2, we find out the incorporating a KG of commonsense knowledge, WordNet (Miller, 1995) into the Bert model (Devlin et al., 2018) is helpful, however, it will hurts the performace of XLNET (Yangetal.,2019), a more powerful pre-trained model. Our approaches achieve the state-of-the-art results on both shared task’s official test data, outperforming all the other submissions.