Bailey Kuehl


2022

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MultiCite: Modeling realistic citations requires moving beyond the single-sentence single-label setting
Anne Lauscher | Brandon Ko | Bailey Kuehl | Sophie Johnson | Arman Cohan | David Jurgens | Kyle Lo
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies

Citation context analysis (CCA) is an important task in natural language processing that studies how and why scholars discuss each others’ work. Despite decades of study, computational methods for CCA have largely relied on overly-simplistic assumptions of how authors cite, which ignore several important phenomena. For instance, scholarly papers often contain rich discussions of cited work that span multiple sentences and express multiple intents concurrently. Yet, recent work in CCA is often approached as a single-sentence, single-label classification task, and thus many datasets used to develop modern computational approaches fail to capture this interesting discourse. To address this research gap, we highlight three understudied phenomena for CCA and release MULTICITE, a new dataset of 12.6K citation contexts from 1.2K computational linguistics papers that fully models these phenomena. Not only is it the largest collection of expert-annotated citation contexts to-date, MULTICITE contains multi-sentence, multi-label citation contexts annotated through-out entire full paper texts. We demonstrate how MULTICITE can enable the development of new computational methods on three important CCA tasks. We release our code and dataset at https://github.com/allenai/multicite.

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Generating Scientific Claims for Zero-Shot Scientific Fact Checking
Dustin Wright | David Wadden | Kyle Lo | Bailey Kuehl | Arman Cohan | Isabelle Augenstein | Lucy Lu Wang
Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)

Automated scientific fact checking is difficult due to the complexity of scientific language and a lack of significant amounts of training data, as annotation requires domain expertise. To address this challenge, we propose scientific claim generation, the task of generating one or more atomic and verifiable claims from scientific sentences, and demonstrate its usefulness in zero-shot fact checking for biomedical claims. We propose CLAIMGEN-BART, a new supervised method for generating claims supported by the literature, as well as KBIN, a novel method for generating claim negations. Additionally, we adapt an existing unsupervised entity-centric method of claim generation to biomedical claims, which we call CLAIMGEN-ENTITY. Experiments on zero-shot fact checking demonstrate that both CLAIMGEN-ENTITY and CLAIMGEN-BART, coupled with KBIN, achieve up to 90% performance of fully supervised models trained on manually annotated claims and evidence. A rigorous evaluation study demonstrates significant improvement in generated claim and negation quality over existing baselines

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SciFact-Open: Towards open-domain scientific claim verification
David Wadden | Kyle Lo | Bailey Kuehl | Arman Cohan | Iz Beltagy | Lucy Lu Wang | Hannaneh Hajishirzi
Findings of the Association for Computational Linguistics: EMNLP 2022

While research on scientific claim verification has led to the development of powerful systems that appear to approach human performance, these approaches have yet to be tested in a realistic setting against large corpora of scientific literature. Moving to this open-domain evaluation setting, however, poses unique challenges; in particular, it is infeasible to exhaustively annotate all evidence documents. In this work, we present SciFact-Open, a new test collection designed to evaluate the performance of scientific claim verification systems on a corpus of 500K research abstracts. Drawing upon pooling techniques from information retrieval, we collect evidence for scientific claims by pooling and annotating the top predictions of four state-of-the-art scientific claim verification models. We find that systems developed on smaller corpora struggle to generalize to SciFact-Open, exhibiting performance drops of at least 15 F1. In addition, analysis of the evidence in SciFact-Open reveals interesting phenomena likely to appear when claim verification systems are deployed in practice, e.g., cases where the evidence supports only a special case of the claim. Our dataset is available at https://github.com/dwadden/scifact-open.

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ACCoRD: A Multi-Document Approach to Generating Diverse Descriptions of Scientific Concepts
Sonia Murthy | Kyle Lo | Daniel King | Chandra Bhagavatula | Bailey Kuehl | Sophie Johnson | Jonathan Borchardt | Daniel Weld | Tom Hope | Doug Downey
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: System Demonstrations

Systems that automatically define unfamiliar terms hold the promise of improving the accessibility of scientific texts, especially for readers who may lack prerequisite background knowledge. However, current systems assume a single “best” description per concept, which fails to account for the many ways a concept can be described. We present ACCoRD, an end-to-end system tackling the novel task of generating sets of descriptions of scientific concepts. Our system takes advantage of the myriad ways a concept is mentioned across the scientific literature to produce distinct, diverse descriptions oftarget concepts in terms of different reference concepts. In a user study, we find that users prefer (1) descriptions produced by our end-to-end system, and (2) multiple descriptions to a single “best” description. We release the ACCoRD corpus which includes 1,275 labeled contexts and 1,787 expert-authored concept descriptions to support research on our task.

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VILA: Improving Structured Content Extraction from Scientific PDFs Using Visual Layout Groups
Zejiang Shen | Kyle Lo | Lucy Lu Wang | Bailey Kuehl | Daniel S. Weld | Doug Downey
Transactions of the Association for Computational Linguistics, Volume 10

Accurately extracting structured content from PDFs is a critical first step for NLP over scientific papers. Recent work has improved extraction accuracy by incorporating elementary layout information, for example, each token’s 2D position on the page, into language model pretraining. We introduce new methods that explicitly model VIsual LAyout (VILA) groups, that is, text lines or text blocks, to further improve performance. In our I-VILA approach, we show that simply inserting special tokens denoting layout group boundaries into model inputs can lead to a 1.9% Macro F1 improvement in token classification. In the H-VILA approach, we show that hierarchical encoding of layout-groups can result in up to 47% inference time reduction with less than 0.8% Macro F1 loss. Unlike prior layout-aware approaches, our methods do not require expensive additional pretraining, only fine-tuning, which we show can reduce training cost by up to 95%. Experiments are conducted on a newly curated evaluation suite, S2-VLUE, that unifies existing automatically labeled datasets and includes a new dataset of manual annotations covering diverse papers from 19 scientific disciplines. Pre-trained weights, benchmark datasets, and source code are available at https://github.com/allenai/VILA.

2021

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MSˆ2: Multi-Document Summarization of Medical Studies
Jay DeYoung | Iz Beltagy | Madeleine van Zuylen | Bailey Kuehl | Lucy Lu Wang
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing

To assess the effectiveness of any medical intervention, researchers must conduct a time-intensive and manual literature review. NLP systems can help to automate or assist in parts of this expensive process. In support of this goal, we release MSˆ2 (Multi-Document Summarization of Medical Studies), a dataset of over 470k documents and 20K summaries derived from the scientific literature. This dataset facilitates the development of systems that can assess and aggregate contradictory evidence across multiple studies, and is the first large-scale, publicly available multi-document summarization dataset in the biomedical domain. We experiment with a summarization system based on BART, with promising early results, though significant work remains to achieve higher summarization quality. We formulate our summarization inputs and targets in both free text and structured forms and modify a recently proposed metric to assess the quality of our system’s generated summaries. Data and models are available at https://github.com/allenai/ms2.