Arjun Magge


2022

pdf
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022
Davy Weissenbacher | Juan Banda | Vera Davydova | Darryl Estrada Zavala | Luis Gasco Sánchez | Yao Ge | Yuting Guo | Ari Klein | Martin Krallinger | Mathias Leddin | Arjun Magge | Raul Rodriguez-Esteban | Abeed Sarker | Lucia Schmidt | Elena Tutubalina | Graciela Gonzalez-Hernandez
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task

For the past seven years, the Social Media Mining for Health Applications (#SMM4H) shared tasks have promoted the community-driven development and evaluation of advanced natural language processing systems to detect, extract, and normalize health-related information in public, user-generated content. This seventh iteration consists of ten tasks that include English and Spanish posts on Twitter, Reddit, and WebMD. Interest in the #SMM4H shared tasks continues to grow, with 117 teams that registered and 54 teams that participated in at least one task—a 17.5% and 35% increase in registration and participation, respectively, over the last iteration. This paper provides an overview of the tasks and participants’ systems. The data sets remain available upon request, and new systems can be evaluated through the post-evaluation phase on CodaLab.

2021

pdf bib
Proceedings of the Sixth Social Media Mining for Health (#SMM4H) Workshop and Shared Task
Arjun Magge | Ari Klein | Antonio Miranda-Escalada | Mohammed Ali Al-garadi | Ilseyar Alimova | Zulfat Miftahutdinov | Eulalia Farre-Maduell | Salvador Lima Lopez | Ivan Flores | Karen O'Connor | Davy Weissenbacher | Elena Tutubalina | Abeed Sarker | Juan M Banda | Martin Krallinger | Graciela Gonzalez-Hernandez
Proceedings of the Sixth Social Media Mining for Health (#SMM4H) Workshop and Shared Task

pdf
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021
Arjun Magge | Ari Klein | Antonio Miranda-Escalada | Mohammed Ali Al-Garadi | Ilseyar Alimova | Zulfat Miftahutdinov | Eulalia Farre | Salvador Lima López | Ivan Flores | Karen O’Connor | Davy Weissenbacher | Elena Tutubalina | Abeed Sarker | Juan Banda | Martin Krallinger | Graciela Gonzalez-Hernandez
Proceedings of the Sixth Social Media Mining for Health (#SMM4H) Workshop and Shared Task

The global growth of social media usage over the past decade has opened research avenues for mining health related information that can ultimately be used to improve public health. The Social Media Mining for Health Applications (#SMM4H) shared tasks in its sixth iteration sought to advance the use of social media texts such as Twitter for pharmacovigilance, disease tracking and patient centered outcomes. #SMM4H 2021 hosted a total of eight tasks that included reruns of adverse drug effect extraction in English and Russian and newer tasks such as detecting medication non-adherence from Twitter and WebMD forum, detecting self-reported adverse pregnancy outcomes, detecting cases and symptoms of COVID-19, identifying occupations mentioned in Spanish by Twitter users, and detecting self-reported breast cancer diagnosis. The eight tasks included a total of 12 individual subtasks spanning three languages requiring methods for binary classification, multi-class classification, named entity recognition and entity normalization. With a total of 97 registering teams and 40 teams submitting predictions, the interest in the shared tasks grew by 70% and participation grew by 38% compared to the previous iteration.

2020

pdf bib
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task
Graciela Gonzalez-Hernandez | Ari Z. Klein | Ivan Flores | Davy Weissenbacher | Arjun Magge | Karen O'Connor | Abeed Sarker | Anne-Lyse Minard | Elena Tutubalina | Zulfat Miftahutdinov | Ilseyar Alimova
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task

pdf
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020
Ari Klein | Ilseyar Alimova | Ivan Flores | Arjun Magge | Zulfat Miftahutdinov | Anne-Lyse Minard | Karen O’Connor | Abeed Sarker | Elena Tutubalina | Davy Weissenbacher | Graciela Gonzalez-Hernandez
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task

The vast amount of data on social media presents significant opportunities and challenges for utilizing it as a resource for health informatics. The fifth iteration of the Social Media Mining for Health Applications (#SMM4H) shared tasks sought to advance the use of Twitter data (tweets) for pharmacovigilance, toxicovigilance, and epidemiology of birth defects. In addition to re-runs of three tasks, #SMM4H 2020 included new tasks for detecting adverse effects of medications in French and Russian tweets, characterizing chatter related to prescription medication abuse, and detecting self reports of birth defect pregnancy outcomes. The five tasks required methods for binary classification, multi-class classification, and named entity recognition (NER). With 29 teams and a total of 130 system submissions, participation in the #SMM4H shared tasks continues to grow.

pdf
UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on Twitter
Arjun Magge | Varad Pimpalkhute | Divya Rallapalli | David Siguenza | Graciela Gonzalez-Hernandez
Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020)

Increasing usage of social media presents new non-traditional avenues for monitoring disease outbreaks, virus transmissions and disease progressions through user posts describing test results or disease symptoms. However, the discussions on the topic of infectious diseases that are informative in nature also span various topics such as news, politics and humor which makes the data mining challenging. We present a system to identify tweets about the COVID19 disease outbreak that are deemed to be informative on Twitter for use in downstream applications. The system scored a F1-score of 0.8941, Precision of 0.9028, Recall of 0.8856 and Accuracy of 0.9010. In the shared task organized as part of the 6th Workshop of Noisy User-generated Text (WNUT), the system was ranked 18th by F1-score and 13th by Accuracy.

2019

pdf
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019
Davy Weissenbacher | Abeed Sarker | Arjun Magge | Ashlynn Daughton | Karen O’Connor | Michael J. Paul | Graciela Gonzalez-Hernandez
Proceedings of the Fourth Social Media Mining for Health Applications (#SMM4H) Workshop & Shared Task

The number of users of social media continues to grow, with nearly half of adults worldwide and two-thirds of all American adults using social networking. Advances in automated data processing, machine learning and NLP present the possibility of utilizing this massive data source for biomedical and public health applications, if researchers address the methodological challenges unique to this media. We present the Social Media Mining for Health Shared Tasks collocated with the ACL at Florence in 2019, which address these challenges for health monitoring and surveillance, utilizing state of the art techniques for processing noisy, real-world, and substantially creative language expressions from social media users. For the fourth execution of this challenge, we proposed four different tasks. Task 1 asked participants to distinguish tweets reporting an adverse drug reaction (ADR) from those that do not. Task 2, a follow-up to Task 1, asked participants to identify the span of text in tweets reporting ADRs. Task 3 is an end-to-end task where the goal was to first detect tweets mentioning an ADR and then map the extracted colloquial mentions of ADRs in the tweets to their corresponding standard concept IDs in the MedDRA vocabulary. Finally, Task 4 asked participants to classify whether a tweet contains a personal mention of one’s health, a more general discussion of the health issue, or is an unrelated mention. A total of 34 teams from around the world registered and 19 teams from 12 countries submitted a system run. We summarize here the corpora for this challenge which are freely available at https://competitions.codalab.org/competitions/22521, and present an overview of the methods and the results of the competing systems.

pdf
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers
Davy Weissenbacher | Arjun Magge | Karen O’Connor | Matthew Scotch | Graciela Gonzalez-Hernandez
Proceedings of the 13th International Workshop on Semantic Evaluation

We present the SemEval-2019 Task 12 which focuses on toponym resolution in scientific articles. Given an article from PubMed, the task consists of detecting mentions of names of places, or toponyms, and mapping the mentions to their corresponding entries in GeoNames.org, a database of geospatial locations. We proposed three subtasks. In Subtask 1, we asked participants to detect all toponyms in an article. In Subtask 2, given toponym mentions as input, we asked participants to disambiguate them by linking them to entries in GeoNames. In Subtask 3, we asked participants to perform both the detection and the disambiguation steps for all toponyms. A total of 29 teams registered, and 8 teams submitted a system run. We summarize the corpus and the tools created for the challenge. They are freely available at https://competitions.codalab.org/competitions/19948. We also analyze the methods, the results and the errors made by the competing systems with a focus on toponym disambiguation.