Script R8 : Plotting Bacterial Taxonomy from MetaPhlan
Load the libraries needed for analysis .
Read in the metadata and format it so that it matches the samples we are working with .
We only want to look at a certain number of taxa to make the data more visually informative .
Now we are ready to read in the MetaPhlAn merged output at the genus level and format it for plotting .
Format sample IDs .
Look at top 10 taxa .
Plot by site symbol and site categories .
