Baris Karacan
2026
Bridging the Domain Divide: Supervised vs. Zero-Shot Clinical Section Segmentation from MIMIC-III to Obstetrics
Baris Karacan | Barbara Di Eugenio | Patrick Thornton
Proceedings of the Fifteenth Language Resources and Evaluation Conference
Baris Karacan | Barbara Di Eugenio | Patrick Thornton
Proceedings of the Fifteenth Language Resources and Evaluation Conference
Clinical free-text notes contain vital patient information. They are structured into labelled sections; recognizing these sections has been shown to support clinical decision-making and downstream NLP tasks. In this paper, we advance clinical section segmentation through three key contributions. First, we curate a new de-identified, section-labeled obstetrics notes dataset, to supplement the medical domains covered in public corpora such as MIMIC-III, on which most existing segmentation approaches are trained. Second, we systematically evaluate transformer-based supervised models for section segmentation on a curated subset of MIMIC-III (in-domain), and on the new obstetrics dataset (out-of-domain). Third, we conduct the first head-to-head comparison of supervised models for medical section segmentation with zero-shot large language models. Our results show that while supervised models perform strongly in-domain, their performance drops substantially out-of-domain. In contrast, zero-shot models demonstrate robust out-of-domain adaptability once hallucinated section headers are corrected. These findings underscore the importance of developing domain-specific clinical resources and highlight zero-shot segmentation as a promising direction for applying healthcare NLP beyond well-studied corpora, as long as hallucinations are appropriately managed.
2024
Towards Comprehensive Language Analysis for Clinically Enriched Spontaneous Dialogue
Baris Karacan | Ankit Aich | Avery Quynh | Amy Pinkham | Philip Harvey | Colin Depp | Natalie Parde
Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024)
Baris Karacan | Ankit Aich | Avery Quynh | Amy Pinkham | Philip Harvey | Colin Depp | Natalie Parde
Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024)
Contemporary NLP has rapidly progressed from feature-based classification to fine-tuning and prompt-based techniques leveraging large language models. Many of these techniques remain understudied in the context of real-world, clinically enriched spontaneous dialogue. We fill this gap by systematically testing the efficacy and overall performance of a wide variety of NLP techniques ranging from feature-based to in-context learning on transcribed speech collected from patients with bipolar disorder, schizophrenia, and healthy controls taking a focused, clinically-validated language test. We observe impressive utility of a range of feature-based and language modeling techniques, finding that these approaches may provide a plethora of information capable of upholding clinical truths about these subjects. Building upon this, we establish pathways for future research directions in automated detection and understanding of psychiatric conditions.