Disambiguating Geographic Names in Biodiversity Occurrence Data: A Retrieval-Augmented Generation Approach

Yanni Jose C. Ella, Monica Ashley R. Laviste, John Michael L. Lastimoso, Wilfred John E. Santiañez, Riza Batista-Navarro, Roselyn Santos Gabud


Abstract
The availability of georeferenced coordinates is essential for biodiversity research, as it enables species distribution modeling and supports conservation planning. However, datasets often contain ambiguous or inconsistent geographic names that reduce spatial accuracy and underscore the need for methods that resolve geographic name ambiguity. While traditional named entity linking strategies are well established, they remain limited in low-resource domains, e.g., in biodiversity contexts, due to the scarcity of annotated training data and high lexical ambiguity of local geographic names. This study proposes a Retrieval-Augmented Generation (RAG) framework to automatically disambiguate Philippine seaweed-related geographic names in databases and literature. This approach utilizes a custom knowledge base of gazetteers to support large language models (LLMs) in the task of geospatial disambiguation. With a disambiguation accuracy of 87.8% within a 5 km distance error threshold, our evaluation shows that the RAG-enabled pipeline significantly outperforms standard LLM baselines (Accuracy@5km = 0%), demonstrating the need for external knowledge to resolve geospatial ambiguity.
Anthology ID:
2026.nlp4ecology-1.4
Volume:
Proceedings of the 2nd Workshop on Ecology, Environment, and Natural Language Processing
Month:
May
Year:
2026
Address:
Palma de Mallorca, Spain
Editors:
Francesca Grasso, Valerio Basile, Cristina Bosco, Muhammad Okky Ibrohim, Maria Skeppstedt, Manfred Stede
Venues:
NLP4Ecology | WS
SIG:
Publisher:
European Language Resources Association
Note:
Pages:
42–52
Language:
External URL:
https://lrec.elra.info/lrec2026-ws-nlp4ecology-04
DOI:
10.63317/3m7qkiiy984w
Bibkey:
Cite (ACL):
Yanni Jose C. Ella, Monica Ashley R. Laviste, John Michael L. Lastimoso, Wilfred John E. Santiañez, Riza Batista-Navarro, and Roselyn Santos Gabud. 2026. Disambiguating Geographic Names in Biodiversity Occurrence Data: A Retrieval-Augmented Generation Approach. In Proceedings of the 2nd Workshop on Ecology, Environment, and Natural Language Processing, pages 42–52, Palma de Mallorca, Spain. European Language Resources Association.
Cite (Informal):
Disambiguating Geographic Names in Biodiversity Occurrence Data: A Retrieval-Augmented Generation Approach (Ella et al., NLP4Ecology 2026)
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