Information Extraction (IE), encompassing Named Entity Recognition (NER), Named Entity Linking (NEL), and Relation Extraction (RE), is critical for transforming the rapidly growing volume of scientific publications into structured, actionable knowledge. This need is especially evident in fast-evolving biomedical fields such as the gut-brain axis, where research investigates complex interactions between the gut microbiota and brain-related disorders. Existing biomedical IE benchmarks, however, are often narrow in scope and rely heavily on distantly supervised or automatically generated annotations, limiting their utility for advancing robust IE methods. We introduce GutBrainIE, a benchmark based on more than 1,600 PubMed abstracts, manually annotated by biomedical and terminological experts with fine-grained entities, concept-level links, and relations. While grounded in the gut-brain axis, the benchmark’s rich schema, multiple tasks, and combination of highly curated and weakly supervised data make it broadly applicable to the development and evaluation of biomedical IE systems across domains.

Syntactic comparison across languages is essential in the research field of linguistics, e.g. when investigating the relationship among closely related languages. In IR and NLP, the syntactic information is used to understand the meaning of word occurrences according to the context in which their appear. In this paper, we discuss a mathematical framework to compute the distance between languages based on the data available in current state-of-the-art linguistic databases. This framework is inspired by approaches presented in IR and NLP.