Large language models (LLMs) have shown remarkable performance on many tasks in different domains. However, their performance in contextual biomedical machine reading comprehension (MRC) has not been evaluated in depth. In this work, we evaluate GPT on four contextual biomedical MRC benchmarks. We experiment with different conventional prompting techniques as well as introduce our own novel prompting method. To solve some of the retrieval problems inherent to LLMs, we propose a prompting strategy named Implicit Retrieval Augmented Generation (RAG) that alleviates the need for using vector databases to retrieve important chunks in traditional RAG setups. Moreover, we report qualitative assessments on the natural language generation outputs from our approach. The results show that our new prompting technique is able to get the best performance in two out of four datasets and ranks second in rest of them. Experiments show that modern-day LLMs like GPT even in a zero-shot setting can outperform supervised models, leading to new state-of-the-art (SoTA) results on two of the benchmarks.

Models based on bidirectional encoder representations from transformers (BERT) produce state of the art (SOTA) results on many natural language processing (NLP) tasks such as named entity recognition (NER), part-of-speech (POS) tagging etc. An interesting phenomenon occurs when classifying long documents such as those from the US supreme court where BERT-based models can be considered difficult to use on a first-pass or out-of-the-box basis. In this paper, we experiment with several BERT-based classification techniques for US supreme court decisions or supreme court database (SCDB) and compare them with the previous SOTA results. We then compare our results specifically with SOTA models for long documents. We compare our results for two classification tasks: (1) a broad classification task with 15 categories and (2) a fine-grained classification task with 279 categories. Our best result produces an accuracy of 80% on the 15 broad categories and 60% on the fine-grained 279 categories which marks an improvement of 8% and 28% respectively from previously reported SOTA results.