Large Reasoning Models (LRMs) achieve strong performance on complex multi-step reasoning, yet they still exhibit severe safety failures such as harmful content generation. Existing methods often apply coarse-grained constraints over the entire reasoning trajectories, which can undermine reasoning capability while failing to address the root causes of unsafe behavior. In this work, we uncover a previously underexplored failure mode in LRMs, termed Self-Jailbreak, where models initially recognize the harmful intent of a query, but override this judgment during subsequent reasoning steps, ultimately generating unsafe outputs. Such a phenomenon reveals that LRMs are capable of recognizing harm, while safety failures primarily arise from reasoning steps. Motivated by this finding, we propose Chain-of-Guardrail (CoG), a trajectory-level training framework that mitigates Self-Jailbreak via targeted, step-level interventions while maintaining reasoning ability. Experiments across multiple safety and reasoning benchmarks indicate that CoG achieves a favorable balance between safety and reasoning performance compared with existing approaches.

Automated Alignment refers to a set of algorithms designed to align Large Language Models (LLMs) with human intentions and values while minimizing manual intervention. However, it faces challenges such as algorithmic diversity and excessively convoluted workflows. We present AutoAlign, an open-source toolkit that offers:(1) a unified framework integrating mainstream automated algorithms through a consistent interface, and(2) an accessible workflow supporting one-click execution for prompt synthesis, automatic alignment signal construction, and iterative model training. Our toolkit enables easy reproduction of existing results through extensive benchmarks and facilitates the development of novel approaches via modular components. It includes implementations for both highly efficient inference and training, as well as low-resource training. By standardizing automated alignment methodologies and providing accessible implementations, AutoAlign lowers the barriers to building customized aligned models and supports academic research.