Multi-modal Retrieval-Augmented Generation (RAG) has emerged as a highly effective paradigm for Knowledge-Based Visual Question Answering (KB-VQA). Despite recent advancements, prevailing methods still primarily depend on images as the retrieval key, and often overlook or misplace the role of Vision-Language Models (VLMs), thereby failing to leverage their potential fully. In this paper, we introduce WikiSeeker, a novel multi-modal RAG framework that bridges these gaps by implementing a multi-modal retriever and redefining the role of VLMs. Rather than serving merely as answer generators, we assign VLMs two specialized agents: a Refiner and an Inspector. The Refiner utilizes the capability of VLMs to rewrite the textual query according to the input image, significantly improving the performance of the multimodal retriever. The Inspector facilitates a decoupled generation strategy by selectively routing reliable retrieved context to another LLM for answer generation, while relying on the VLM’s internal knowledge when retrieval is unreliable. Extensive experiments on EVQA, InfoSeek, and M2KR demonstrate that WikiSeeker achieves state-of-the-art performance, with substantial improvements in both retrieval accuracy and answer quality.

Large reasoning models (LRMs) show strong capabilities in complex reasoning, yet their marginal gains on evidence-dependent factual questions are limited. We find this limitation is partially attributable to a reasoning–answer hit gap, where the model identifies the correct facts during reasoning but fails to incorporate them into the final response, thereby reducing factual fidelity. To address this issue, we propose MR-ALIGN, a Meta-Reasoning informed alignment framework that enhances factuality without relying on external verifiers. MR-ALIGN quantifies state-transition probabilities along the model’s thinking process and constructs a transition-aware implicit reward that reinforces beneficial reasoning patterns while suppressing defective ones at the atomic thinking segments. This re-weighting reshapes token-level signals into probability-aware segment scores, encouraging coherent reasoning trajectories that are more conducive to factual correctness. Empirical evaluations across four factual QA datasets and one long-form factuality benchmark show that MR-ALIGN consistently improves accuracy and truthfulness while reducing misleading reasoning. These results highlight that aligning the reasoning process itself, rather than merely the outputs, is pivotal for advancing factuality in LRMs.