Linlin Shen
2026
Benchmarking Egocentric Clinical Intent Understanding Capability for Medical Multimodal Large Language Models
Shaonan Liu | Guo Yu | Xiaoling Luo | Shiyi Zheng | Jie Liu | Wenting Chen | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Shaonan Liu | Guo Yu | Xiaoling Luo | Shiyi Zheng | Jie Liu | Wenting Chen | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Medical Multimodal Large Language Models (Med-MLLMs) require egocentric clinical intent understanding for real-world deployment, yet existing benchmarks fail to evaluate this critical capability. We introduce MedGaze-Bench, the first benchmark leveraging clinician gaze as a Cognitive Cursor to assess intent understanding across surgery, emergency simulation, and diagnostic interpretation. Our benchmark addresses three fundamental challenges: visual homogeneity of anatomical structures, strict temporal-causal dependencies in clinical workflows, and implicit adherence to safety protocols. We propose a Three-Dimensional Clinical Intent Framework evaluating: (1) Spatial Intent—discriminating precise targets amid visual noise, (2) Temporal Intent—inferring causal rationale through retrospective and prospective reasoning, and (3) Standard Intent—verifying protocol compliance through safety checks. Beyond accuracy metrics, we introduce Trap QA mechanisms to stress-test clinical reliability by penalizing hallucinations and cognitive sycophancy. Experiments reveal current MLLMs struggle with egocentric intent due to over-reliance on global features, leading to fabricated observations and uncritical acceptance of invalid instructions.
KoCo: Conditioning Language Model Pre-training on Knowledge Coordinates
Yudong Li | Jiawei Cai | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Yudong Li | Jiawei Cai | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Standard Large Language Model (LLM) pre-training typically treats corpora as flattened token sequences, often overlooking the real-world context that humans naturally rely on to contextualize information. To bridge this gap, we introduce Knowledge Coordinate Conditioning (KoCo), a simple method that maps every document into a three-dimensional semantic coordinate. By prepending these coordinates as textual prefixes for pre-training, we aim to equip the model with explicit contextual awareness to learn the documents within the real-world knowledge structure. Experiment results demonstrate that KoCo significantly enhances performance across 10 downstream tasks and accelerates pre-training convergence by approximately 30%. Furthermore, our analysis indicates that explicitly modeling knowledge coordinates helps the model distinguish stable facts from noise, effectively mitigating hallucination in generated outputs.
Beyond the Leaderboard: Rethinking Medical Benchmarks for Large Language Models
Wenxuan Wang | Zizhan Ma | Guo Yu | Yiu-Fai Cheung | Meidan Ding | Jie Liu | Wenting Chen | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Wenxuan Wang | Zizhan Ma | Guo Yu | Yiu-Fai Cheung | Meidan Ding | Jie Liu | Wenting Chen | Linlin Shen
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Large language models (LLMs) show significant potential in healthcare, prompting numerous benchmarks to evaluate their capabilities. However, concerns persist regarding the reliability of these benchmarks, which often lack clinical fidelity, robust data management, and safety-oriented evaluation metrics. To address these shortcomings, we introduce MedCheck, the first lifecycle-oriented assessment framework specifically designed for medical benchmarks. Our framework deconstructs benchmark development into five stages from design to governance, and provides a comprehensive checklist of 46 medically-tailored criteria. Using MedCheck, we conducted an in-depth empirical evaluation of 56 medical LLM benchmarks. Our analysis uncovers widespread, systemic issues, including a profound disconnect from clinical practice, a crisis of data integrity due to unmitigated contamination risks, and a systematic neglect of safety-critical evaluation dimensions like model robustness and uncertainty awareness. Based on these findings, MedCheck is both a diagnostic tool for existing benchmarks and an actionable guideline for a more standardized, reliable, and transparent approach to evaluating AI in healthcare.
2025
EAGLE: Expert-Guided Self-Enhancement for Preference Alignment in Pathology Large Vision-Language Model
Meidan Ding | Jipeng Zhang | Wenxuan Wang | Haiqin Zhong | Xiaoqin Wang | Xinheng Lyu | Wenting Chen | Linlin Shen
Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Meidan Ding | Jipeng Zhang | Wenxuan Wang | Haiqin Zhong | Xiaoqin Wang | Xinheng Lyu | Wenting Chen | Linlin Shen
Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Recent advancements in Large Vision Language Models (LVLMs) show promise for pathological diagnosis, yet their application in clinical settings faces critical challenges of multimodal hallucination and biased responses. While preference alignment methods have proven effective in general domains, acquiring high-quality preference data for pathology remains challenging due to limited expert resources and domain complexity. In this paper, we propose EAGLE (Expert-guided self-enhancement for preference Alignment in patholoGy Large vision-languagE model), a novel framework that systematically integrates medical expertise into preference alignment. EAGLE consists of three key stages: initialization through supervised fine-tuning, self-preference creation leveraging expert prompting and medical entity recognition, and iterative preference following-tuning. The self-preference creation stage uniquely combines expert-verified chosen sampling with expert-guided rejected sampling to generate high-quality preference data, while the iterative tuning process continuously refines both data quality and model performance. Extensive experiments demonstrate that EAGLE significantly outperforms existing pathological LVLMs, effectively reducing hallucination and bias while maintaining pathological accuracy. The source code is available at https://github.com/meidandz/EAGLE.
Asclepius: A Spectrum Evaluation Benchmark for Medical Multi-Modal Large Language Models
Jie Liu | Wenxuan Wang | Su Yihang | Jingyuan Huang | Yudi Zhang | Cheng-Yi Li | Wenting Chen | Xiaohan Xing | Kao-Jung Chang | Linlin Shen | Michael R. Lyu
Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Jie Liu | Wenxuan Wang | Su Yihang | Jingyuan Huang | Yudi Zhang | Cheng-Yi Li | Wenting Chen | Xiaohan Xing | Kao-Jung Chang | Linlin Shen | Michael R. Lyu
Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
The significant breakthroughs of Medical Multi-Modal Large Language Models (Med-MLLMs) renovate modern healthcare with robust information synthesis and medical decision support. However, these models are often evaluated on benchmarks that are unsuitable for the Med-MLLMs due to the intricate nature of the real-world diagnostic frameworks, which encompass diverse medical specialties and involve complex clinical decisions. Thus, a clinically representative benchmark is highly desirable for credible Med-MLLMs evaluation. To this end, we introduce Asclepius, a novel Med-MLLM benchmark that comprehensively assesses Med-MLLMs in terms of: distinct medical specialties (cardiovascular, gastroenterology, etc.) and different diagnostic capacities (perception, disease analysis, etc.). Grounded in 3 proposed core principles, Asclepius ensures a comprehensive evaluation by encompassing 15 medical specialties, stratifying into 3 main categories and 8 sub-categories of clinical tasks, and exempting overlap with the existing VQA dataset. We further provide an in-depth analysis of 6 Med-MLLMs and compare them with 3 human specialists, providing insights into their competencies and limitations in various medical contexts. Our work not only advances the understanding of Med-MLLMs’ capabilities but also sets a precedent for future evaluations and the safe deployment of these models in clinical environments.
2024
Fine-Grained Image-Text Alignment in Medical Imaging Enables Explainable Cyclic Image-Report Generation
Wenting Chen | Linlin Shen | Jingyang Lin | Jiebo Luo | Xiang Li | Yixuan Yuan
Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Wenting Chen | Linlin Shen | Jingyang Lin | Jiebo Luo | Xiang Li | Yixuan Yuan
Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
Fine-grained vision-language models (VLM) have been widely used for inter-modality local alignment between the predefined fixed patches and textual words. However, in medical analysis, lesions exhibit varying sizes and positions, and using fixed patches may cause incomplete representations of lesions. Moreover, these methods provide explainability by using heatmaps to show the general image areas potentially associated with texts rather than specific regions, making their explanations not explicit and specific enough. To address these issues, we propose a novel Adaptive patch-word Matching (AdaMatch) model to correlate chest X-ray (CXR) image regions with words in medical reports and apply it to CXR-report generation to provide explainability for the generation process. AdaMatch exploits the fine-grained relation between adaptive patches and words to provide explanations of specific image regions with corresponding words. To capture the abnormal regions of varying sizes and positions, we introduce an Adaptive Patch extraction (AdaPatch) module to acquire adaptive patches for these regions adaptively. Aiming to provide explicit explainability for the CXR-report generation task, we propose an AdaMatch-based bidirectional LLM for Cyclic CXR-report generation (AdaMatch-Cyclic). It employs AdaMatch to obtain the keywords for CXR images and ‘keypatches’ for medical reports as hints to guide CXR-report generation. Extensive experiments on two publicly available CXR datasets validate the effectiveness of our method and its superior performance over existing methods. Source code will be released.
2023
TencentPretrain: A Scalable and Flexible Toolkit for Pre-training Models of Different Modalities
Zhe Zhao | Yudong Li | Cheng Hou | Jing Zhao | Rong Tian | Weijie Liu | Yiren Chen | Ningyuan Sun | Haoyan Liu | Weiquan Mao | Han Guo | Weigang Gou | Taiqiang Wu | Tao Zhu | Wenhang Shi | Chen Chen | Shan Huang | Sihong Chen | Liqun Liu | Feifei Li | Xiaoshuai Chen | Xingwu Sun | Zhanhui Kang | Xiaoyong Du | Linlin Shen | Kimmo Yan
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 3: System Demonstrations)
Zhe Zhao | Yudong Li | Cheng Hou | Jing Zhao | Rong Tian | Weijie Liu | Yiren Chen | Ningyuan Sun | Haoyan Liu | Weiquan Mao | Han Guo | Weigang Gou | Taiqiang Wu | Tao Zhu | Wenhang Shi | Chen Chen | Shan Huang | Sihong Chen | Liqun Liu | Feifei Li | Xiaoshuai Chen | Xingwu Sun | Zhanhui Kang | Xiaoyong Du | Linlin Shen | Kimmo Yan
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 3: System Demonstrations)
Recently, the success of pre-training in text domain has been fully extended to vision, audio, and cross-modal scenarios. The proposed pre-training models of different modalities are showing a rising trend of homogeneity in their model structures, which brings the opportunity to implement different pre-training models within a uniform framework. In this paper, we present TencentPretrain, a toolkit supporting pre-training models of different modalities. The core feature of TencentPretrain is the modular design. The toolkit uniformly divides pre-training models into 5 components: embedding, encoder, target embedding, decoder, and target. As almost all of common modules are provided in each component, users can choose the desired modules from different components to build a complete pre-training model. The modular design enables users to efficiently reproduce existing pre-training models or build brand-new one. We test the toolkit on text, vision, and audio benchmarks and show that it can match the performance of the original implementations.
2022
CSL: A Large-scale Chinese Scientific Literature Dataset
Yudong Li | Yuqing Zhang | Zhe Zhao | Linlin Shen | Weijie Liu | Weiquan Mao | Hui Zhang
Proceedings of the 29th International Conference on Computational Linguistics
Yudong Li | Yuqing Zhang | Zhe Zhao | Linlin Shen | Weijie Liu | Weiquan Mao | Hui Zhang
Proceedings of the 29th International Conference on Computational Linguistics
Scientific literature serves as a high-quality corpus, supporting a lot of Natural Language Processing (NLP) research. However, existing datasets are centered around the English language, which restricts the development of Chinese scientific NLP. In this work, we present CSL, a large-scale Chinese Scientific Literature dataset, which contains the titles, abstracts, keywords and academic fields of 396k papers. To our knowledge, CSL is the first scientific document dataset in Chinese. The CSL can serve as a Chinese corpus. Also, this semi-structured data is a natural annotation that can constitute many supervised NLP tasks. Based on CSL, we present a benchmark to evaluate the performance of models across scientific domain tasks, i.e., summarization, keyword generation and text classification. We analyze the behavior of existing text-to-text models on the evaluation tasks and reveal the challenges for Chinese scientific NLP tasks, which provides a valuable reference for future research. Data and code will be publicly available.
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- Wenting Chen 5
- Yudong Li 3
- Jie Liu 3
- Meidan Ding 2
- Weijie Liu 2
- Weiquan Mao 2
- Wenxuan Wang 2
- Guo Yu 2
- Zhe Zhao 2
- Jiawei Cai 1
- Kao-Jung Chang 1
- Yiren Chen 1
- Chen Chen 1
- Sihong Chen 1
- Xiaoshuai Chen 1
- Yiu-Fai Cheung 1
- Xiaoyong Du 1
- Weigang Gou 1
- Han Guo 1
- Cheng Hou 1
- Shan Huang 1
- Jingyuan Huang 1
- Zhanhui Kang 1
- Xiang Li 1
- Feifei Li 1
- Cheng-Yi Li 1
- Jingyang Lin 1
- Shaonan Liu 1
- Haoyan Liu 1
- Liqun Liu 1
- Jiebo Luo 1
- Xiaoling Luo 1
- Xinheng Lyu 1
- Michael R. Lyu 1
- Zizhan Ma 1
- Wenhang Shi 1
- Ningyuan Sun 1
- Xingwu Sun 1
- Rong Tian 1
- Xiaoqin Wang 1
- Wenxuan Wang 1
- Taiqiang Wu 1
- Xiaohan Xing 1
- Kimmo Yan 1
- Su Yihang 1
- Yixuan Yuan 1
- Jipeng Zhang 1
- Yuqing Zhang 1
- Hui Zhang (张晖) 1
- Yudi Zhang 1
- Jing Zhao 1
- Shiyi Zheng 1
- Haiqin Zhong 1
- Tao Zhu 1