Ke Li

Other people with similar names: Ke Li, Ke Li

Unverified author pages with similar names: Ke Li


2024

Recent studies have revealed the vulnerability of pre-trained language models to adversarial attacks. Adversarial defense techniques have been proposed to reconstruct adversarial examples within feature or text spaces. However, these methods struggle to effectively repair the semantics in adversarial examples, resulting in unsatisfactory defense performance. To repair the semantics in adversarial examples, we introduce a novel approach named Reactive Perturbation Defocusing (Rapid), which employs an adversarial detector to identify the fake labels of adversarial examples and leverages adversarial attackers to repair the semantics in adversarial examples. Our extensive experimental results, conducted on four public datasets, demonstrate the consistent effectiveness of Rapid in various adversarial attack scenarios. For easy evaluation, we provide a click-to-run demo of Rapid at https://tinyurl.com/22ercuf8.
RNA foundation models (FMs) have been extensively used to interpret genomic sequences and address a wide range of in-silico genomic tasks. However, current RNA FMs often overlook the incorporation of secondary structures in the pretraining of FMs, which impedes the effectiveness in various genomic tasks. To address this problem, we leverage filtered high-fidelity structure annotations for structure pretraining to enhance the modeling ability of FMs in single nucleotide resolution tasks. Experimental evaluations across four comprehensive genomic benchmarks demonstrate that our RNA FM consistently outperforms existing RNA FMs, achieving a 40% improvement in RNA secondary structure prediction and obtaining top-tier results on DNA genomic benchmarks even though it has not been pretrained on any DNA genome. We release the code and models to encourage further research to bridge the gap between in-silico predictions and biological reality.