Large language models (LLMs) used for multiple-choice and pairwise evaluation tasks often exhibit selection bias due to non-semantic factors like option positions and label symbols. Existing inference-time debiasing is costly and may harm reasoning, while pointwise training ignores that the same question should yield consistent answers across permutations. To address this issue, we propose Permutation-Aware Group Relative Policy Optimization (PA-GRPO), which mitigates selection bias by enforcing permutation-consistent semantic reasoning. PA-GRPO constructs a permutation group for each instance by generating multiple candidate permutations, and optimizes the model using two complementary mechanisms: (1) cross-permutation advantage, which computes advantages relative to the mean reward over all permutations of the same instance, and (2) consistency-aware reward, which encourages the model to produce consistent decisions across different permutations. Experimental results demonstrate that PA-GRPO outperforms strong baselines across seven benchmarks, substantially reducing selection bias while maintaining high overall performance. The code is available on github (https://github.com/ECNU-Text-Computing/PA-GRPO).

Scientific ideation aims to propose novel solutions within a given scientific context. Existing LLM-based agentic approaches emulate human research workflows, yet inadequately model scientific reasoning, resulting in surface-level conceptual recombinations that lack technical depth and scientific grounding. To address this issue, we propose MoRI (Motivation-grounded Reasoning for Scientific Ideation), a framework that enables LLMs to explicitly learn the reasoning process from research motivations to methodologies. The base LLM is initialized via supervised fine-tuning to generate a research motivation from a given context, and is subsequently trained under a composite reinforcement learning reward that approximates scientific rigor: (1) entropy-aware information gain encourages the model to uncover and elaborate high-complexity technical details grounded in ground-truth methodologies, and (2) contrastive semantic gain constrains the reasoning trajectory to remain conceptually aligned with scientifically valid solutions. Empirical results show that MoRI consistently outperforms strong commercial LLMs and complex agentic baselines across multiple dimensions, including novelty, technical rigor, and feasibility. The code is available on GitHub.