Transformer-based Small (SLMs) and Large Language Models (LLMs) achieve strong effectiveness in text classification (TC), yet deployment requires reliable confidence estimates. Although miscalibration in Transformers has been reported, evidence for TC under fine-tuning remains limited. We evaluate the calibration of fine-tuned SLMs and LLMs against Logistic Regression, a classical, well-calibrated baseline, and find that, despite superior effectiveness, Transformers remain markedly overconfident. Crucially, we show that widely used calibration metrics, such as Expected Calibration Error and Brier Score, become biased in high-effectiveness regimes, where the dominance of correct predictions masks severe miscalibration on errors, sometimes even suggesting better calibration than Logistic Regression, a well-known calibrated method. To address this limitation, we propose the Balanced Brier Score (BBS), which balances the contribution of correct and incorrect predictions within confidence bins. BBS reveals substantially poorer calibration in both SLMs and LLMs, consistent with qualitative evidence from calibration curves. These findings challenge current calibration assessment practices and provide a more reliable alternative for evaluating confidence quality in Transformer-based TC.

Skewness in imbalanced datasets affects Automatic Text Classification (ATC), leading to classifier bias toward the majority classes. This work examines undersampling methods to mitigate such bias in Small and Large Language Model (SLMs and LLMs) classifiers. Based on the limitations found in existing solutions, we propose two novel undersampling methods inspired by state-of-the-art Instance Selection techniques, relying on calibrated confidences and semantic difficulty estimates. We compare them against 19 baselines across 13 datasets, evaluating: (i) effectiveness, (ii) class imbalance bias, (iii) efficiency, (iv) scalability, and (v) consistency. Results show our methods uniquely reduce classifier bias (up to 56%) across all datasets without effectiveness loss while improving efficiency (1.6x speedup), scalability and reducing carbon emissions (up to 50%).