Large language models (LLMs) are increasingly being deployed in cost- and latency-sensitive settings. While chain-of-thought improves reasoning, it can waste tokens on simple requests. We study selective thinking for tool-using LLMs and introduce Adaptive Rejection Sampling (Ada-RS), an algorithm-agnostic sample filtering framework for learning selective and efficient reasoning. For each given context, Ada-RS scores multiple sampled completions with an adaptive length-penalized reward then applies stochastic rejection sampling to retain only high-reward candidates (or preference pairs) for downstream optimization. We demonstrate how Ada-RS plugs into both preference pair (e.g. DPO) or grouped policy optimization strategies (e.g. DAPO). Using Qwen3-8B with LoRA on a synthetic tool call-oriented e-commerce benchmark, Ada-RS improves the accuracy-efficiency frontier over standard algorithms by reducing average output tokens by up to ∼80% and reducing thinking rate by up to ∼95% while maintaining or improving tool call accuracy. We further demonstrate that these gains generalize across model scales (Qwen3-1.7B, 8B, 14B) and domains (τ 2-Bench airline and telecom). These results highlight that training signal selection is a powerful lever for efficient reasoning in latency-sensitive deployments.

Interactive large language model (LLM) agents operating via multi-turn dialogue and multi-step tool calling are increasingly used in production. Benchmarks for these agents must both reliably compare models and yield on-policy training data. Prior agentic benchmarks (e.g., tau-bench, tau^2-bench, AppWorld) rely on fully deterministic backends, which are costly to build and iterate. We propose Proxy State-Based Evaluation, an LLM-driven simulation framework that preserves final state-based evaluation without a deterministic database. Specifically, a scenario specifies the user goal, user/system facts, expected final state, and expected agent behavior, and an LLM state tracker infers a structured proxy state from the full interaction trace. LLM judges then verify goal completion and detect tool/user hallucinations against scenario constraints. Empirically, our benchmark produces stable, model-differentiating rankings across families and inference-time reasoning efforts, and its on- and off-policy rollouts provide supervision that transfers to unseen scenarios. Careful scenario specification yields near-zero simulator hallucination rates, as supported by ablation studies. The framework also supports sensitivity analyses over user personas. Human-LLM judge agreement exceeds 90%, indicating reliable automated evaluation. Overall, proxy state-based evaluation offers a practical, scalable alternative to deterministic agentic benchmarks for industrial LLM agents.

Wet laboratory protocols (WLPs) are critical for conveying reproducible procedures in biological research. They are composed of instructions written in natural language describing the step-wise processing of materials by specific actions. This process flow description for reagents and materials synthesis in WLPs can be captured by material state transfer graphs (MSTGs), which encode global temporal and causal relationships between actions. Here, we propose methods to automatically generate a MSTG for a given protocol by extracting all action relationships across multiple sentences. We also note that previous corpora and methods focused primarily on local intra-sentence relationships between actions and entities and did not address two critical issues: (i) resolution of implicit arguments and (ii) establishing long-range dependencies across sentences. We propose a new model that incrementally learns latent structures and is better suited to resolving inter-sentence relations and implicit arguments. This model draws upon a new corpus WLP-MSTG which was created by extending annotations in the WLP corpora for inter-sentence relations and implicit arguments. Our model achieves an F1 score of 54.53% for temporal and causal relations in protocols from our corpus, which is a significant improvement over previous models - DyGIE++:28.17%; spERT:27.81%. We make our annotated WLP-MSTG corpus available to the research community.

We describe an effort to annotate a corpus of natural language instructions consisting of 622 wet lab protocols to facilitate automatic or semi-automatic conversion of protocols into a machine-readable format and benefit biological research. Experimental results demonstrate the utility of our corpus for developing machine learning approaches to shallow semantic parsing of instructional texts. We make our annotated Wet Lab Protocol Corpus available to the research community.