@inproceedings{shimizu-etal-2026-herd,
    title = "A Herd of Language Models Makes a Better Zero-shot Annotator for Clinical Named Entity Recognition",
    author = "Shimizu, Seiji  and
      Wakamiya, Shoko  and
      Aramaki, Eiji",
    editor = "Liakata, Maria  and
      Moreira, Viviane P.  and
      Zhang, Jiajun  and
      Jurgens, David",
    booktitle = "Findings of the {A}ssociation for {C}omputational {L}inguistics: {ACL} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California, United States",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl/2026.findings-acl.599/",
    pages = "12327--12344",
    ISBN = "979-8-89176-395-1",
    abstract = "Clinical named entity recognition (NER) remains difficult to scale due to the high cost of manual annotation. Although large language models (LLMs) enable zero-shot annotation, their performance on clinical NER is still limited. To this end, we improve the annotation quality by aggregating annotations from *a herd of diverse LLMs*, including general-purpose, medically adapted, and NER-specialized models. A key challenge in this multi-LLM setting is effectively leveraging entities extracted by only a minority of models: although they account for a substantial portion of true positives, they are heavily intermixed with noise. To address this, we introduce **MARY**, a label-modeling method for **M**ulti-LLM **A**nnotation using **R**epresentation learning to capture contextual similarit**Y**. During aggregation, MARY selectively incorporates minority-extracted entities whose contexts are similar to those of majority-extracted entities, yielding more reliable and comprehensive annotations. Experimental results show that MARY improves the average F1 score by 8.6{\%} over vanilla zero-shot baselines while reducing annotation costs."
}