Enrich, Aggregate, and Generate: Three-stage Biomedical Data-to-Text Generation Using Large Language Models in Low-resource Scenarios
Yupian Lin, Guangya Yu, Yuang Bian, Cheng Yuan, Hui Luo, Tong Ruan
Abstract
Biomedical data-to-text generation aims at generating textual natural language descriptions that can fluently and precisely describe the biomedical structured data. However, biomedical data-to-text generation faces the dilemma of a lack of labeled data due to the privacy and scarcity of medical data. Large language models (LLMs) have demonstrated the ability to solve few-shot tasks through in-context learning (ICL). In this paper, we are the first to explore the performance of different LLMs in the biomedical data-to-text generation task.To address the issues of semantic sparsity and misinterpretation of numerical values in biomedical structured data, we propose an EAG (Enrich, Aggregate, and Generate) framework, a simple but efficient LLM-based three-stage biomedical D2T approach in low-resource scenarios. We conduct extensive evaluations of closed-source general LLMs, open-source general LLMs, and open-source medical LLMs. The results show that the EAG framework provides good interpretability and superior performance, achieving state-of-the-art performance on the BioLeaflets dataset. The code and data will be released at https://github.com/FXLP/EAG.- Anthology ID:
- 2026.findings-acl.1875
- Volume:
- Findings of the Association for Computational Linguistics: ACL 2026
- Month:
- July
- Year:
- 2026
- Address:
- San Diego, California, United States
- Editors:
- Maria Liakata, Viviane P. Moreira, Jiajun Zhang, David Jurgens
- Venue:
- Findings
- SIG:
- Publisher:
- Association for Computational Linguistics
- Note:
- Pages:
- 37611–37622
- Language:
- URL:
- https://preview.aclanthology.org/ingest-acl/2026.findings-acl.1875/
- DOI:
- Cite (ACL):
- Yupian Lin, Guangya Yu, Yuang Bian, Cheng Yuan, Hui Luo, and Tong Ruan. 2026. Enrich, Aggregate, and Generate: Three-stage Biomedical Data-to-Text Generation Using Large Language Models in Low-resource Scenarios. In Findings of the Association for Computational Linguistics: ACL 2026, pages 37611–37622, San Diego, California, United States. Association for Computational Linguistics.
- Cite (Informal):
- Enrich, Aggregate, and Generate: Three-stage Biomedical Data-to-Text Generation Using Large Language Models in Low-resource Scenarios (Lin et al., Findings 2026)
- PDF:
- https://preview.aclanthology.org/ingest-acl/2026.findings-acl.1875.pdf