@proceedings{bionlp-2026-1,
    title = "{B}io{NLP} 2026",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.0/",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{hassan-2026-divergence,
    title = "The Divergence Hypothesis: Unmasking Lexical Interference and Label Bias in Mental Health {NLP}",
    author = "Hassan, Moustafa",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.1/",
    pages = "1--14",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{roy-roy-2026-towards,
    title = "Towards Unified Factuality Evaluation for Biomedical {QA} and Summarization: Aligning Metrics with Clinical Use-Cases",
    author = "Roy, Mahule  and
      Roy, Subhas",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.2/",
    pages = "15--19",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{barlow-etal-2026-using,
    title = "Using Synthetic Records to Improve Automated Identification of Seizure Freedom in Clinical Text about People with Epilepsy",
    author = "Barlow, Stephen  and
      Gan, Yujian  and
      Davies, Joe  and
      Winston, Joel  and
      Teo, James  and
      Richardson, Mark  and
      Holgate, Ben",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.3/",
    pages = "20--30",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{khatun-etal-2026-analyzing,
    title = "Analyzing Prompt Design Choices in Biomedical Information Extraction for Low-Resource Languages",
    author = "Khatun, Ayesha  and
      Ozler, Kadir Bulut  and
      Bethard, Steven  and
      Laparra, Egoitz",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.4/",
    pages = "31--44",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{labbe-etal-2026-hierarchy,
    title = "Hierarchy-Aware Hyperbolic and Semantic Reranking for Ontology-Based Phenotype Linking",
    author = "Labbe, Thomas  and
      Baddour, Moussa  and
      Bonesteve, Axel  and
      Rollier, Paul  and
      De Tayrac, Marie  and
      Dameron, Olivier",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.5/",
    pages = "45--63",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{aiersilan-qu-2026-agentic,
    title = "Agentic Feature Selection via {LLM} for Epileptic Seizure Detection",
    author = "Aiersilan, Aizierjiang  and
      Qu, Xiaodong",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.6/",
    pages = "64--74",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{wang-etal-2026-training-biomedical,
    title = "Training Biomedical Retrievers From Large-Scale Citation Contexts",
    author = "Wang, Xing David  and
      Le Thanh, Duy  and
      Leser, Ulf",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.7/",
    pages = "75--83",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{morales-sanchez-etal-2026-reliable,
    title = "Reliable Automated Triage in {S}panish Clinical Notes: A Hybrid Framework for Risk-Aware {HIV} Suspicion Identification",
    author = "Morales-S{\'a}nchez, Rodrigo  and
      Montalvo, Soto  and
      Mart{\'i}nez, Raquel",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.8/",
    pages = "84--96",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{sylvestre-2026-gold,
    title = "Gold Label Errors in the {S}ci{F}act Benchmark: An {LLM}-Assisted Annotation Audit",
    author = "Sylvestre, Julien",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.9/",
    pages = "97--103",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{bhojani-etal-2026-biorag,
    title = "{B}io{RAG}: A Systematic Ablation Study of Retrieval Strategies for Biomedical Question Answering",
    author = "Bhojani, Krushil  and
      Waghmare, Mayank  and
      Nandyala, Hima Bindu",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.10/",
    pages = "104--114",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{xu-etal-2026-post,
    title = "Post Hoc Agentic Refinement for Improving Precision in Multilingual Clinical Text De-identification",
    author = "Xu, Justin  and
      Johnson, Alistair  and
      Lin, Thomas  and
      Eyre, David  and
      Quispe, Rodolfo",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.11/",
    pages = "115--127",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{sikder-kwegyir-afful-2026-syntactic,
    title = "Do Syntactic Features Help Biomedical Relation Extraction? An Empirical Study of Verb Token and Dependency Graph Augmentation",
    author = "Sikder, Mustafa  and
      Kwegyir-Afful, Ernest",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.12/",
    pages = "128--134",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{kondadadi-ortega-2026-beyond,
    title = "Beyond Knowledge Graphs: {P}ub{M}ed{BERT} Embeddings as a Competitive Standalone Modality for Drug Re-purposing",
    author = "Kondadadi, Rishik  and
      Ortega, John E.",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.13/",
    pages = "135--140",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{yoo-2026-demographic,
    title = "When Demographic Sensitivity Isn{'}t What It Seems: Baseline-Aware Counterfactual Audits for Clinical {NLP}",
    author = "Yoo, Hyunwoo",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.14/",
    pages = "141--155",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{ondov-etal-2026-coreelm,
    title = "{C}ore{ELM}: An Open-Source Framework for Aligning Large Language Models to Embedding Spaces",
    author = "Ondov, Brian  and
      Chang, Chia-Hsuan  and
      Zhou, Yujia  and
      Giuffr{\`e}, Mauro  and
      Xu, Hua",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.15/",
    pages = "156--180",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{zecevic-etal-2026-uncertainty,
    title = "Uncertainty-Aware Multi-Label Routing of Clinical Text to Surveillance Pathways",
    author = "Zecevic, Agathe  and
      Zeki, Sebastian  and
      Roberts, Angus",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.16/",
    pages = "181--190",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{ratas-etal-2026-medcat,
    title = "{M}ed{CAT} v2: a modular, extensible architecture for clinical named entity recognition and linking under real-world privacy and compute constraints",
    author = "Ratas, Mart  and
      Searle, Thomas  and
      Sutton, Adam  and
      Dobson, Richard",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.17/",
    pages = "191--198",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{lynam-henry-2026-effects,
    title = "Effects of Adaptive Pretraining in Specialized Domains for Named Entity Recognition",
    author = "Lynam, Jack  and
      Henry, Sam",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.18/",
    pages = "199--208",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{belmadani-etal-2026-trade,
    title = "Trade-offs in Medical {LLM} Adaptation: An Empirical Study in {F}rench {QA}",
    author = "Belmadani, Ikram  and
      El Khettari, Oumaima  and
      Ramisch, Carlos  and
      Bechet, Frederic  and
      Dufour, Richard  and
      Favre, Benoit",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.19/",
    pages = "209--234",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{lin-etal-2026-promptrad,
    title = "{P}rompt{R}ad: Knowledge-Enhanced Multi-Label Prompt-Tuning for Low-Resource Radiology Report Labeling",
    author = "Lin, Ying-Jia  and
      Lo, Tzu-Chin  and
      Li, Ping-Chien  and
      Cheng, Chi-Tung  and
      Liao, Chien-Hung  and
      Kao, Hung-Yu",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.20/",
    pages = "235--249",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{liao-etal-2026-diagnosing,
    title = "Diagnosing Lower Extremity Arteriovenous Diseases Using Agentic {LLM}s",
    author = "Liao, Zicen  and
      Sun, Yunhao  and
      Purver, Matthew",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.21/",
    pages = "250--267",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{liu-etal-2026-kgrxn,
    title = "{KGR}xn-{LLM}: Knowledge Graph Enhanced Large Language Models for Molecular Reaction Reasoning",
    author = "Liu, Weichen  and
      Xue, Qiyao  and
      Wu, Yuyang  and
      Isayev, Olexandr  and
      Miskov-Zivanov, Natasa",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.22/",
    pages = "268--281",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{singh-etal-2026-max,
    title = "{MAX}-{EVAL}-11: A Large Scale Benchmark for Evaluating Large Language Models on Full-Spectrum {ICD}-11 Medical Coding",
    author = "Singh, Ujjwal  and
      Deshwal, Sarthak  and
      Dube, Nitish  and
      Sharma, Arjun",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.23/",
    pages = "282--291",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{ben-atya-etal-2026-trustworthy,
    title = "Trustworthy {NLP} for Low-Resource Languages: Agent-Based Uncertainty Modeling for {H}ebrew Radiology Report Structuring",
    author = "Ben Atya, Hadas  and
      Gavrielov, Naama  and
      Badash, Zvi  and
      Focht, Gili  and
      Cytter-Kuint, Ruth  and
      Hagopian, Talar  and
      Turner, Dan  and
      Freiman, Moti",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.24/",
    pages = "292--311",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{yano-takamura-2026-treating,
    title = "Treating Decoder-Only {LLM}s as Encoders: A Simple and Effective Fine-tuning Approach for Named Entity Recognition",
    author = "Yano, Ken  and
      Takamura, Hiroya",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.25/",
    pages = "312--325",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{shah-etal-2026-multi,
    title = "A Multi-View Framework for Cross-Domain Nutrition Misinformation Detection in Social Media",
    author = "Shah, Vishwaa  and
      Kahanda, Indika  and
      Arikawa, Andrea  and
      Abbaszadeh, Asal  and
      Loftis, Richard",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.26/",
    pages = "326--341",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{rubinfeld-etal-2026-ontological,
    title = "Ontological Validation of Biomedical Topic Models: {SNOMED} {CT} Hierarchy Distance as an Automated Evaluation Metric",
    author = "Rubinfeld, Ilan  and
      Zaidi, Sami  and
      Djuric, Milosh  and
      Kabbani, Loay  and
      Halabi, Mouhammad  and
      Shepard, Alex",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.27/",
    pages = "342--352",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{liu-etal-2026-systematic-evaluation,
    title = "Systematic Evaluation of the Quality of Synthetic Clinical Notes Rephrased by {LLM}s at Million-Note Scale",
    author = "Liu, Jinghui  and
      Soni, Sarvesh  and
      Nguyen, Anthony",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.28/",
    pages = "353--371",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{liu-nguyen-2026-bridging,
    title = "Bridging the Version Gap: Multi-version Training Improves {ICD} Code Prediction, Especially for Rare Codes",
    author = "Liu, Jinghui  and
      Nguyen, Anthony",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.29/",
    pages = "372--381",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{guo-etal-2026-emcellllm,
    title = "{E}m{C}ell{LLM}: Human Peri-Implantation Embryonic Cell Annotation Based on Large Language Models",
    author = "Guo, Xiaorui  and
      Liu, Zhiwei  and
      Xie, Qianqian  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.30/",
    pages = "382--391",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{sanchez-carmona-etal-2026-randomized,
    title = "Randomized Controlled Trials as the Gold-Standard for Evaluating {LLM}s: A Primer for Biomedical {NLP} Researchers",
    author = "Sanchez Carmona, Vicente Ivan  and
      Jiang, Shanshan  and
      Dong, Bin",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.31/",
    pages = "392--406",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{asada-etal-2026-citation,
    title = "Citation-Aware Continual Pre-Training for Biomedical Language Models",
    author = "Asada, Masaki  and
      Tsujimura, Tomoki  and
      Ishigaki, Tatsuya  and
      Egami, Shusaku  and
      Fukuda, Ken  and
      Takamura, Hiroya",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.32/",
    pages = "407--412",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{buhnila-etal-2026-tracklist,
    title = "{T}rack{L}ist: Tracing Back Query Linguistic Diversity for Head and Tail Medical Knowledge in Open Large Language Models",
    author = "Buhnila, Ioana  and
      Sinha, Aman  and
      Constant, Mathieu",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.33/",
    pages = "413--425",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{jobanputra-etal-2026-discharge,
    title = "Discharge Instructions are not One Task: Grounding Differences Between Surgical and Non-Surgical Admissions",
    author = "Jobanputra, Mayank  and
      Xu, Justin  and
      Oza, Samarth  and
      Naseer, Hulma  and
      Wang, Yifan  and
      Veseli, Blerta  and
      Kona, Chandralekha  and
      Cui, Haochen  and
      Eyre, David  and
      Demberg, Vera",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.34/",
    pages = "426--434",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{dao-etal-2026-prionner,
    title = "{P}rion{NER}: A Named Entity Recognition Dataset for Prion Disease Biomedical Literature",
    author = "Dao, An  and
      Ly, Nhan  and
      Tran, Thao  and
      Matsumoto, Yuji  and
      Aizawa, Akiko",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.35/",
    pages = "435--463",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{pelloni-etal-2026-evaluation,
    title = "Evaluation of Multilingual Text Simplification for the Mental Health Domain: Exploring Small Language Models",
    author = "Pelloni, Olga  and
      Just, Sandra  and
      Bongo, Lars",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.36/",
    pages = "464--474",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{yeganova-etal-2026-biotopicxplor,
    title = "{B}io{T}opic{X}plor: A Web Tool for Interactive Exploration of {P}ub{M}ed Literature through Reproducible Topics.",
    author = "Yeganova, Lana  and
      Comeau, Donald  and
      Kim, Won  and
      Xie, Natalie  and
      Tian, Shubo  and
      Wilbur, W John  and
      Lu, Zhiyong",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.37/",
    pages = "475--480",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{soni-etal-2026-reading,
    title = "Reading Between the Lines: Toward Translating Verbose Patient-authored Messages into Clinician-Formulated Questions",
    author = "Soni, Sarvesh  and
      Bittner, Madeline  and
      Demner-Fushman, Dina",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.38/",
    pages = "481--489",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{dahal-etal-2026-investigating,
    title = "Investigating Stigmatizing Language in Clinical Documentation with Open-Source Large Language Models",
    author = "Dahal, Rajashree  and
      Hosseinpour, Pardis  and
      Kamishetty, Pranithi  and
      Pamulaparthy, Satwik  and
      Tizpaz-Niari, Saeid  and
      Parde, Natalie",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.39/",
    pages = "490--501",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{kim-etal-2026-learning,
    title = "Learning to Combine {AI} Annotations for Improved Biomedical Relevance Labeling",
    author = "Kim, Won Gyu  and
      Yeganova, Lana  and
      Tian, Shubo  and
      Comeau, Donald  and
      Wilbur, W John  and
      Lu, Zhiyong",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.40/",
    pages = "502--507",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{elmofty-leser-2026-retrieval,
    title = "When Does Retrieval Beat Direct {LLM} Diagnosis in Rare Disease? An Empirical Study of Ontology Coverage",
    author = "Elmofty, Mohamed  and
      Leser, Ulf",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.41/",
    pages = "508--518",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{salem-etal-2026-biocoref,
    title = "{B}io{C}oref: Benchmarking Biomedical Coreference Resolution with {LLM}s",
    author = "Salem, Nourah  and
      White, Elizabeth  and
      Bada, Michael  and
      Hunter, Lawrence",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.42/",
    pages = "519--530",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{aal-abdulsalam-etal-2026-multi,
    title = "A Multi-Agent Open-Source {LLM} for Structured Cancer Registry Information Extraction from Pathology and Medical Reports",
    author = "Aal Abdulsalam, Abdulrahman  and
      Al Zaabi, Adhari  and
      Jeeballah, Riham  and
      El Keraby, Habiba",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.43/",
    pages = "531--551",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{kirubakaran-gagnier-2026-bioconflict,
    title = "{B}io{C}onflict: A Benchmark for Evaluating Large Language Models in Biomedical Contradiction Detection and Consensus Synthesis",
    author = "Kirubakaran, Ashwin  and
      Gagnier, Henry",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.44/",
    pages = "552--558",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{lanz-pecina-2026-tokenization,
    title = "Tokenization Granularity and Medical Term Representations in Language Models",
    author = "Lanz, Vojtech  and
      Pecina, Pavel",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.45/",
    pages = "559--571",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{lee-etal-2026-cap,
    title = "{CAP}: A Source-Grounded Proposition Scaffold for Faithful Clinical Dialogue-to-Note Generation",
    author = "Lee, Hyunkyung  and
      Jung, Jisoo  and
      Lee, Jeonguk  and
      Yoo, Jaehyo  and
      Han, Wooseok  and
      Kim, Minkyu  and
      Kim, Gibaeg",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.46/",
    pages = "572--594",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{bellucci-etal-2026-segmentation,
    title = "Segmentation Matters: Exploring {LLM}-Based Strategies for Temporal Clinical Event Identification in Oncology Reports",
    author = "Bellucci, Cristiano  and
      Madeddu, Francesco  and
      Iacomini, Chiara  and
      Masciocchi, Carlotta  and
      Patarnello, Stefano  and
      Bernaschi, Massimo  and
      Santoro, Mario  and
      Lilli, Livia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.47/",
    pages = "595--604",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{tao-etal-2026-operation,
    title = "Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records",
    author = "Tao, Guanyu  and
      Wang, Siyao  and
      Xue, Yong  and
      Tanwar, Ashwani  and
      Ji, Yuting  and
      Sun, Kai  and
      Mok, Monica  and
      Chowdhury, Marzana  and
      Gupta, Deepa  and
      Gupta, Ashok  and
      Zhang, Jingqing  and
      Gupta, Vibhor  and
      Guo, Yike",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.48/",
    pages = "605--616",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{martinez-novoa-etal-2026-meshclass,
    title = "{M}e{SHC}lass-{ES} and {A}nat{EM}-{ES}: Open Resources for {S}panish Biomedical {NLP}",
    author = "Martinez Novoa, Santiago  and
      Gomez Mesa, Lina  and
      Prieto, Juan  and
      Manrique, Ruben",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.49/",
    pages = "617--629",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{han-etal-2026-evidence,
    title = "When Evidence Conflicts: Uncertainty and Order Effects in Retrieval-Augmented Biomedical Question Answering",
    author = "Han, Yikun  and
      Lan, Mengfei  and
      Kilicoglu, Halil",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.50/",
    pages = "630--643",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{jones-etal-2026-comparative,
    title = "A Comparative Analysis of In-Context Learning and Fine-Tuning for Biomedical Information Retrieval and Sentence Extraction Using Research Domain Criteria",
    author = "Jones, Athlene  and
      Lieu, Khanh  and
      Kahanda, Indika",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.51/",
    pages = "644--655",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{au-2026-clinical,
    title = "Clinical Evidence and Patient Reviews: A Linked Dataset for Antidepressant Side Effects",
    author = "Au, Steven",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.52/",
    pages = "656--664",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{agarwal-etal-2026-deterministic,
    title = "A Deterministic Multi-Stage Retrieval Pipeline for Longitudinal {EHR} Question Answering",
    author = "Agarwal, Shubham  and
      Searle, Thomas  and
      Dobson, Richard  and
      Majkic, Ninoslav  and
      Moller-Grell, Niko",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.53/",
    pages = "665--678",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{wang-etal-2026-interpretable-icd,
    title = "Interpretable {ICD} Code Classification with Faithful Sentence Extraction",
    author = "Wang, Yichen  and
      Hong, Lian  and
      Mizogaki, Masato  and
      Umeda, Shunnosuke  and
      Kenmotsu, Toshimune  and
      Tamura, Akihiro  and
      Andrade, Daniel",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.54/",
    pages = "679--686",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{buhnila-etal-2026-evaluating,
    title = "Evaluating {LLM}-as-a-Judge for Medical Term Simplification",
    author = "Buhnila, Ioana  and
      Sinha, Aman  and
      Agarwal, Rohit  and
      Prasad, Dilip K.  and
      Constant, Mathieu",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.55/",
    pages = "687--694",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{nam-etal-2026-fact,
    title = "{FACT}: Functional Group Alignment and Consistency in Token Space for Structure-aware Molecular Representation Learning",
    author = "Nam, Hyeonyeong  and
      Choi, Woojae  and
      Lee, Deok-Joong  and
      Son, Young-Han  and
      Lee, Sangwoon  and
      Kang, Bogyeong  and
      Jo, Eunjung  and
      Kam, Tae-Eui",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.56/",
    pages = "695--703",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{kumar-2026-small,
    title = "Small {LLM}s for Biomedical Claim Verification: Cost-Effective Fine-Tuning, Structural Dataset Shortcuts, and Cross-Domain Generalization",
    author = "Kumar, Gaurav",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.57/",
    pages = "704--712",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{remy-2026-diagnosable,
    title = "Diagnosable {C}ol{BERT}: Debugging Late-Interaction Retrieval Models Using a Learned Latent Space as Reference",
    author = "Remy, Fran{\c{c}}ois",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.58/",
    pages = "713--717",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{bittner-etal-2026-developing,
    title = "Developing Literature Annotation Guidelines for Representing Normal Physiology in Biolink-Compatible Knowledge Graphs",
    author = "Bittner, Madeline  and
      Rogers, Willie  and
      Demner-Fushman, Dina  and
      Scheuermann, Richard  and
      Diller, Matthew",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.59/",
    pages = "718--728",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{taneja-etal-2026-cent,
    title = "{CENT}: Context Engineering Framework for Normalization of Clinical Trial Procedures",
    author = "Taneja, Sanya  and
      Ji, Ziqing  and
      Verstraete, Hans  and
      Samadani, Ali",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.60/",
    pages = "729--741",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{hanken-2026-agentic,
    title = "Agentic {AI} Architectures for {SOAP} Note Generation",
    author = "Hanken, Keno",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.61/",
    pages = "742--752",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{ma-etal-2026-vericite,
    title = "{VERICITE}: Evaluating Sentence-Level Citation Faithfulness in Retrieval-Augmented Medical Question Answering",
    author = "Ma, Yixian  and
      Chu, Bohao  and
      Fuhr, Norbert",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.62/",
    pages = "753--759",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{elgaar-etal-2026-overview,
    title = "Overview of the Medical Decision Extraction, Analysis, and Classification Task ({M}ed{E}x{ACT}) of {B}io{NLP} 2026",
    author = "Elgaar, Mohamed  and
      Cheng, Jiali  and
      Vakil, Nidhi  and
      Sadrolashrafi, Mehrnaz  and
      Mohtarami, Mitra  and
      Wong, Adrian  and
      Amiri, Hadi  and
      Celi, Leo",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.63/",
    pages = "760--769",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{lin-etal-2026-divide,
    title = "Divide-Prompt-Refine: a Training-Free, Structure-Aware Framework for Biomedical Abstract Generation",
    author = "Lin, Sylvey  and
      Menke, Joseph  and
      Ming, Shufan  and
      Nam, Dongin  and
      Smalheiser, Neil  and
      Kilicoglu, Halil",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.64/",
    pages = "770--790",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{maury-etal-2026-aabaac,
    title = "{AA}b{AAC}: An Annotated Corpus for Autoimmunity Information Extraction",
    author = "Maury, Fabien  and
      Grosdidier, Sol{\`e}ne  and
      De Dieuleveult, Maud  and
      Coulet, Adrien",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.65/",
    pages = "791--800",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{leaman-etal-2026-biomedical,
    title = "What Do Biomedical {NER} and Entity Linking Benchmarks Measure? A Corpus-Centric Diagnostic Framework",
    author = "Leaman, Robert  and
      Islamaj, Rezarta  and
      Lu, Zhiyong",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.66/",
    pages = "801--811",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{colelough-etal-2026-towards,
    title = "Towards Grounded Hallucination Definitions for Biomedical Question Answering with Reproducible Examples from {C}lin{IQL}ink",
    author = "Colelough, Brandon  and
      Bartels, Davis  and
      Bittner, Madeline  and
      Demner-Fushman, Dina",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.67/",
    pages = "812--842",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{alharbi-stevenson-2026-nlp,
    title = "Can {NLP} Models Detect When One Publication Outweighs Twenty? Predicting Systematic Review Conclusion Changes",
    author = "Alharbi, Ebrahim  and
      Stevenson, Mark",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.68/",
    pages = "843--852",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{ilgen-etal-2026-vaxscope,
    title = "{V}ax{S}cope: Document-Level Structured Evidence Extraction from Immunization Systematic Reviews",
    author = "Ilgen, Bahar  and
      Awotoro, Ebenezer  and
      Hattab, Georges",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.69/",
    pages = "853--863",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{sinha-etal-2026-medical,
    title = "Medical Context Variation: A source of impairment for Event classification",
    author = "Sinha, Aman  and
      Clausel, Marianne  and
      Constant, Mathieu  and
      Coubez, Xavier",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.70/",
    pages = "864--879",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{arazkhani-etal-2026-kalimba,
    title = "{KALIMBA}: Knowledge-Assisted Literature Mining for Biological Interaction Analysis",
    author = "Arazkhani, Niloofar  and
      Kotecki, Maciej  and
      Cochran, Brent  and
      Miskov-Zivanov, Natasa",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.71/",
    pages = "880--889",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{nourbakhsh-etal-2026-retrieval,
    title = "When Retrieval Doesn{'}t Help: A Large-Scale Study of Biomedical {RAG}",
    author = "Nourbakhsh, Erfan  and
      Slavin, Rocky  and
      Yang, Ke  and
      Rios, Anthony",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.72/",
    pages = "890--910",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{chu-fuhr-2026-crossddi,
    title = "{C}ross{DDI}: Cross-Source Evidence-Grounded Drug-Drug Interaction Verification",
    author = "Chu, Bohao  and
      Fuhr, Norbert",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.73/",
    pages = "911--919",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{jiang-kavuluru-2026-graft,
    title = "{GRAFT}: Gated Retrieval-Augmented Fine-Tuning for Relation Extraction",
    author = "Jiang, Yuhang  and
      Kavuluru, Ramakanth",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.74/",
    pages = "920--931",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{na-etal-2026-overview,
    title = "Overview of the {P}sy{D}ef{D}etect Shared Task at {B}io{NLP} 2026: Detecting Levels of Psychological Defense Mechanisms in Supportive Conversations",
    author = "Na, Hongbin  and
      Wang, Zimu  and
      Chen, Zhaoming  and
      Hua, Yining  and
      Gao, Rena  and
      Yang, Kailai  and
      Chen, Ling  and
      Wang, Wei  and
      Ji, Shaoxiong  and
      Torous, John  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.75/",
    pages = "932--943",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{chowdhury-etal-2026-scope,
    title = "{SC}o{PE}: Planning for Hybrid Querying over Clinical Trial Data",
    author = "Chowdhury, Suparno  and
      Choudhury, Manan  and
      Anvekar, Tejas  and
      Khan, Muhammed  and
      Khakwani, Kaneez  and
      Sonbol, Mohamad  and
      Riaz, Irbaz  and
      Gupta, Vivek",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.76/",
    pages = "944--954",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{stachura-etal-2026-expert,
    title = "Expert-Guided Schema-Based Structured Extraction from {CONSORT} Diagrams Using Vision-Language Models",
    author = "Stachura, Damian  and
      Przechera, Bartosz  and
      Opa?ek, Monika  and
      Sadowska, Ewelina  and
      Borowiack, Ewa  and
      Nowak, Artur",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.77/",
    pages = "955--969",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{mahanipour-khamfroush-2026-rules,
    title = "From Rules to Predictions: Federated Tabular Learning with {LLM} Reasoning",
    author = "Mahanipour, Afsaneh  and
      Khamfroush, Hana",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.78/",
    pages = "970--980",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{jalan-etal-2026-medbench,
    title = "{M}ed{B}ench: Deliberative Evaluation of Medical Language Models",
    author = "Jalan, Pratik  and
      Joshi, Mukul  and
      Magotra, Akhilesh  and
      Jadhav, Kshitij",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.79/",
    pages = "981--991",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{sutton-etal-2026-fast,
    title = "Fast, Accurate, and Local Conversion of {MIMIC}-{IV} to {OMOP} with {DBT}",
    author = "Sutton, Adam  and
      Moller-Grell, Niko  and
      Searle, Thomas  and
      Dobson, Richard",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.80/",
    pages = "992--996",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{afnan-etal-2026-exploring,
    title = "Exploring Novel Drug Research Area using Large Language Models Based on Research Trends in Biomedical Literature",
    author = "Afnan, Afnan  and
      Van Supranes, Michael  and
      Nishiyama, Tomohiro  and
      Wakamiya, Shoko  and
      Aramaki, Eiji",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.81/",
    pages = "997--1013",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{nguyen-etal-2026-fhexchange,
    title = "{FH}exchange: Resources for Family Health History Extraction and Normalization From Consumer Dialog Sources",
    author = "Nguyen, Michelle  and
      Soley, Nidhi  and
      Zirikly, Ayah  and
      Sedoc, Jo{\~a}o  and
      Taylor, Casey",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.82/",
    pages = "1014--1028",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{floresca-etal-2026-forgotten,
    title = "Forgotten Words: Benchmarking {N}eo{BERT} for Dementia Detection in Low-Resource Conversational {F}ilipino and {E}nglish Speech",
    author = "Floresca, Rez Samantha  and
      Hao, Edric Castel  and
      Bu{\~n}ales, Hannah Grachiella  and
      Temprosa, Chelsea Dominique  and
      Reyes, Georgianna  and
      Chua, Kervin Gabriel",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.83/",
    pages = "1029--1040",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{nigam-etal-2026-indicmeddialog,
    title = "{I}ndic{M}ed{D}ialog: A Parallel Multi-Turn Medical Dialogue Dataset for Accessible Healthcare in {I}ndic Languages",
    author = "Nigam, Shubham  and
      Sarkar, Suparnojit  and
      Patel, Piyush",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.84/",
    pages = "1041--1055",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{zhang-etal-2026-towards-radiologist,
    title = "Towards a Radiologist Imitation Framework for 3{D} {CT} Diagnosis with Multimodal {LLM}s",
    author = "Zhang, Kaidi  and
      Yan, Zhiyuan  and
      Cheng, Gao  and
      Cai, Zhenyang",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.85/",
    pages = "1056--1065",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{pal-2026-probing,
    title = "Probing and Steering Uncertainty in Biomedical Language Models: Representational Structure and Behavioral Limits",
    author = "Pal, Debmalya",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.86/",
    pages = "1066--1079",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{bartels-etal-2026-relations,
    title = "Relations of Linguistic Features and Medical Text Preferences are Nontrivial",
    author = "Bartels, Davis  and
      Colelough, Brandon  and
      Demner-Fushman, Dina",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.87/",
    pages = "1080--1088",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{gupta-etal-2026-overview,
    title = "Overview of the {M}ed{G}en{V}id{QA} 2026 Shared Task on Medical Generative Video Question Answering",
    author = "Gupta, Deepak  and
      Campbell, Collin  and
      Golnari, Pedram  and
      Demner-Fushman, Dina",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.88/",
    pages = "1089--1100",
    ISBN = "979-8-89176-434-7"
}
@inproceedings{huang-etal-2026-overview,
    title = "Overview of the {C}linical{S}kill{QA} 2026 Shared Task on Continuous Perception and Procedural Reasoning in Clinical Skill Assessment",
    author = "Huang, Xiyang  and
      Wei, Renxiong  and
      Xu, Yihuai  and
      Chen, Zhiyuan  and
      Wu, Keying  and
      Xiang, Jiayi  and
      Tang, Buzhou  and
      Ye, Yanqing  and
      Chen, Jinyu  and
      Zeng, Cheng  and
      Peng, Min  and
      Xie, Qianqian  and
      Ananiadou, Sophia",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Roberts, Kirk  and
      Tsujii, Junichi",
    booktitle = "{B}io{NLP} 2026",
    month = jul,
    year = "2026",
    address = "San Diego, California",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.89/",
    pages = "1101--1108",
    ISBN = "979-8-89176-434-7"
}