A Tale of Trust and Accuracy: Base vs. Instruct LLMs in RAG Systems
Florin Cuconasu, Giovanni Trappolini, Nicola Tonellotto, Fabrizio Silvestri
Abstract
Retrieval-Augmented Generation (RAG) represents a significant advancement in artificial intelligence combining a retrieval phase with a generative phase, with the latter typically being powered by Large Language Models (LLMs). Common wisdom and practices in RAG involve using "instructed" LLMs, which are fine-tuned with supervised training to enhance their ability to follow instructions and are aligned with human preferences using state-of-the-art techniques.However, contrary to this popular belief, our study demonstrates that base models outperform their instructed counterparts in RAG tasks by 20% on average under our experimental settings. This finding challenges the prevailing assumptions about the superiority of instructed LLMs in RAG applications. Further investigations reveal a more complex situation, questioning fundamental aspects of RAG and suggesting the need for broader discussions on the topic; or, as Fromm would have it, "Seldom is a glance at the statistics enough to understand the meaning of the figures".- Anthology ID:
- 2026.rag4reports-1.3
- Volume:
- Proceedings of the 1st Workshop on Multilingual Report Generation via Retrieval Augmented Generation (RAG4Reports 2026)
- Month:
- July
- Year:
- 2026
- Address:
- San Diego, CA, USA
- Editors:
- Eugene Yang, Dawn Lawrie, Sean MacAvaney, James Mayfield, Luca Soldaini, Andrew Yates
- Venues:
- RAG4Reports | WS
- SIG:
- Publisher:
- Association for Computational Linguistics
- Note:
- Pages:
- 1–23
- Language:
- URL:
- https://preview.aclanthology.org/ingest-acl-workshops/2026.rag4reports-1.3/
- DOI:
- Cite (ACL):
- Florin Cuconasu, Giovanni Trappolini, Nicola Tonellotto, and Fabrizio Silvestri. 2026. A Tale of Trust and Accuracy: Base vs. Instruct LLMs in RAG Systems. In Proceedings of the 1st Workshop on Multilingual Report Generation via Retrieval Augmented Generation (RAG4Reports 2026), pages 1–23, San Diego, CA, USA. Association for Computational Linguistics.
- Cite (Informal):
- A Tale of Trust and Accuracy: Base vs. Instruct LLMs in RAG Systems (Cuconasu et al., RAG4Reports 2026)
- PDF:
- https://preview.aclanthology.org/ingest-acl-workshops/2026.rag4reports-1.3.pdf