Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records

Guanyu Tao, Siyao Wang, Yong Xue, Ashwani Tanwar, Yuting Ji, Kai Sun, Monica Mok, Marzana Chowdhury, Deepa Gupta, Ashok Gupta, Jingqing Zhang, Vibhor Gupta, Yike Guo


Abstract
Clinical reasoning over electronic health records (EHRs) involves heterogeneous operations, including text interpretation, numerical computation, temporal filtering, and guideline-based aggregation. However, many existing LLM-based approaches still cast these heterogeneous operations as a single end-to-end generation process, obscuring their different reliability requirements and making intermediate failures difficult to inspect. We therefore propose a framework based on operation-mechanism alignment that represents clinical reasoning as a directed acyclic graph of typed operations, where each node is assigned to the execution mechanism best suited to its reliability requirements. The framework also preserves structured evidence provenance for intermediate results. Across six clinician-annotated binary decision tasks, the framework outperforms direct prompting, single-step retrieval-augmented prompting, and chain-of-thought baselines, supporting operation-mechanism alignment as a practical design principle for reliable clinical reasoning over EHRs.
Anthology ID:
2026.bionlp-1.48
Volume:
BioNLP 2026
Month:
July
Year:
2026
Address:
San Diego, California
Editors:
Dina Demner-Fushman, Sophia Ananiadou, Kirk Roberts, Junichi Tsujii
Venues:
BioNLP | WS
SIG:
Publisher:
Association for Computational Linguistics
Note:
Pages:
605–616
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URL:
https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.48/
DOI:
Bibkey:
Cite (ACL):
Guanyu Tao, Siyao Wang, Yong Xue, Ashwani Tanwar, Yuting Ji, Kai Sun, Monica Mok, Marzana Chowdhury, Deepa Gupta, Ashok Gupta, Jingqing Zhang, Vibhor Gupta, and Yike Guo. 2026. Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records. In BioNLP 2026, pages 605–616, San Diego, California. Association for Computational Linguistics.
Cite (Informal):
Operation-Mechanism Alignment for Reliable Clinical Reasoning over Electronic Health Records (Tao et al., BioNLP 2026)
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PDF:
https://preview.aclanthology.org/ingest-acl-workshops/2026.bionlp-1.48.pdf