Clinical notes in healthcare facilities are tagged with the International Classification of Diseases (ICD) code; a list of classification codes for medical diagnoses and procedures. ICD coding is a challenging multilabel text classification problem due to noisy clinical document inputs and long-tailed label distribution. Recent automated ICD coding efforts improve performance by encoding medical notes and codes with additional data and knowledge bases. However, most of them do not reflect how human coders generate the code: first, the coders select general code categories and then look for specific subcategories that are relevant to a patient’s condition. Inspired by this, we propose a two-stage decoding mechanism to predict ICD codes. Our model uses the hierarchical properties of the codes to split the prediction into two steps: At first, we predict the parent code and then predict the child code based on the previous prediction. Experiments on the public MIMIC-III data set have shown that our model performs well in single-model settings without external data or knowledge.

Medical progress notes play a crucial role in documenting a patient’s hospital journey, including his or her condition, treatment plan, and any updates for healthcare providers. Automatic summarisation of a patient’s problems in the form of a “problem list” can aid stakeholders in understanding a patient’s condition, reducing workload and cognitive bias. BioNLP 2023 Shared Task 1A focusses on generating a list of diagnoses and problems from the provider’s progress notes during hospitalisation. In this paper, we introduce our proposed approach to this task, which integrates two complementary components. One component employs large language models (LLMs) for data augmentation; the other is an abstractive summarisation LLM with a novel pre-training objective for generating the patients’ problems summarised as a list. Our approach was ranked second among all submissions to the shared task. The performance of our model on the development and test datasets shows that our approach is more robust on unknown data, with an improvement of up to 3.1 points over the same size of the larger model.

We introduce a novel top-down end-to-end formulation of document level discourse parsing in the Rhetorical Structure Theory (RST) framework. In this formulation, we consider discourse parsing as a sequence of splitting decisions at token boundaries and use a seq2seq network to model the splitting decisions. Our framework facilitates discourse parsing from scratch without requiring discourse segmentation as a prerequisite; rather, it yields segmentation as part of the parsing process. Our unified parsing model adopts a beam search to decode the best tree structure by searching through a space of high scoring trees. With extensive experiments on the standard RST discourse treebank, we demonstrate that our parser outperforms existing methods by a good margin in both end-to-end parsing and parsing with gold segmentation. More importantly, it does so without using any handcrafted features, making it faster and easily adaptable to new languages and domains.

We introduce a generic seq2seq parsing framework that casts constituency parsing problems (syntactic and discourse parsing) into a series of conditional splitting decisions. Our parsing model estimates the conditional probability distribution of possible splitting points in a given text span and supports efficient top-down decoding, which is linear in number of nodes. The conditional splitting formulation together with efficient beam search inference facilitate structural consistency without relying on expensive structured inference. Crucially, for discourse analysis we show that in our formulation, discourse segmentation can be framed as a special case of parsing which allows us to perform discourse parsing without requiring segmentation as a pre-requisite. Experiments show that our model achieves good results on the standard syntactic parsing tasks under settings with/without pre-trained representations and rivals state-of-the-art (SoTA) methods that are more computationally expensive than ours. In discourse parsing, our method outperforms SoTA by a good margin.

We propose a novel constituency parsing model that casts the parsing problem into a series of pointing tasks. Specifically, our model estimates the likelihood of a span being a legitimate tree constituent via the pointing score corresponding to the boundary words of the span. Our parsing model supports efficient top-down decoding and our learning objective is able to enforce structural consistency without resorting to the expensive CKY inference. The experiments on the standard English Penn Treebank parsing task show that our method achieves 92.78 F1 without using pre-trained models, which is higher than all the existing methods with similar time complexity. Using pre-trained BERT, our model achieves 95.48 F1, which is competitive with the state-of-the-art while being faster. Our approach also establishes new state-of-the-art in Basque and Swedish in the SPMRL shared tasks on multilingual constituency parsing.

We propose Differentiable Window, a new neural module and general purpose component for dynamic window selection. While universally applicable, we demonstrate a compelling use case of utilizing Differentiable Window to improve standard attention modules by enabling more focused attentions over the input regions. We propose two variants of Differentiable Window, and integrate them within the Transformer architecture in two novel ways. We evaluate our proposed approach on a myriad of NLP tasks, including machine translation, sentiment analysis, subject-verb agreement and language modeling. Our experimental results demonstrate consistent and sizable improvements across all tasks.

We address the problem of speech act recognition (SAR) in asynchronous conversations (forums, emails). Unlike synchronous conversations (e.g., meetings, phone), asynchronous domains lack large labeled datasets to train an effective SAR model. In this paper, we propose methods to effectively leverage abundant unlabeled conversational data and the available labeled data from synchronous domains. We carry out our research in three main steps. First, we introduce a neural architecture based on hierarchical LSTMs and conditional random fields (CRF) for SAR, and show that our method outperforms existing methods when trained on in-domain data only. Second, we improve our initial SAR models by semi-supervised learning in the form of pretrained word embeddings learned from a large unlabeled conversational corpus. Finally, we employ adversarial training to improve the results further by leveraging the labeled data from synchronous domains and by explicitly modeling the distributional shift in two domains.