This study explores strategies for efficiently classifying scientific full texts using both small, BERT-based models and local large language models like Llama-3.1 8B. We focus on developing methods for selecting subsets of input sentences to reduce input size while simultaneously enhancing classification performance. To this end, we compile a novel dataset consisting of full-text scientific papers from the field of invasion biology, specifically addressing the impacts of invasive species. These papers are aligned with publicly available impact assessments created by researchers for the International Union for Conservation of Nature (IUCN). Through extensive experimentation, we demonstrate that various sources like human evidence annotations, LLM-generated annotations or explainability scores can be used to train sentence selection models that improve the performance of both encoder- and decoder-based language models while optimizing efficiency through the reduction in input length, leading to improved results even if compared to models like ModernBERT that are able to handle the complete text as input. Additionally, we find that repeated sampling of shorter inputs proves to be a very effective strategy that, at a slightly increased cost, can further improve classification performance.

We propose an end-to-end differentiable training paradigm for stable training of a rationalized transformer classifier. Our approach results in a single model that simultaneously classifies a sample and scores input tokens based on their relevance to the classification. To this end, we build on the widely-used three-player-game for training rationalized models, which typically relies on training a rationale selector, a classifier and a complement classifier. We simplify this approach by making a single model fulfill all three roles, leading to a more efficient training paradigm that is not susceptible to the common training instabilities that plague existing approaches. Further, we extend this paradigm to produce class-wise rationales while incorporating recent advances in parameterizing and regularizing the resulting rationales, thus leading to substantially improved and state-of-the-art alignment with human annotations without any explicit supervision.