@proceedings{ws-2011-bionlp-shared,
    title = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1800/"
}
@inproceedings{kim-etal-2011-overview,
    title = "Overview of {B}io{NLP} Shared Task 2011",
    author = "Kim, Jin-Dong  and
      Pyysalo, Sampo  and
      Ohta, Tomoko  and
      Bossy, Robert  and
      Nguyen, Ngan  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1801/",
    pages = "1--6"
}
@inproceedings{kim-etal-2011-overview-genia,
    title = "Overview of {G}enia Event Task in {B}io{NLP} Shared Task 2011",
    author = "Kim, Jin-Dong  and
      Wang, Yue  and
      Takagi, Toshihisa  and
      Yonezawa, Akinori",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1802/",
    pages = "7--15"
}
@inproceedings{ohta-etal-2011-overview,
    title = "Overview of the Epigenetics and Post-translational Modifications ({EPI}) task of {B}io{NLP} Shared Task 2011",
    author = "Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1803/",
    pages = "16--25"
}
@inproceedings{pyysalo-etal-2011-overview,
    title = "Overview of the Infectious Diseases ({ID}) task of {B}io{NLP} Shared Task 2011",
    author = "Pyysalo, Sampo  and
      Ohta, Tomoko  and
      Rak, Rafal  and
      Sullivan, Dan  and
      Mao, Chunhong  and
      Wang, Chunxia  and
      Sobral, Bruno  and
      Tsujii, Jun{'}ichi  and
      Ananiadou, Sophia",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1804/",
    pages = "26--35"
}
@inproceedings{vlachos-craven-2011-biomedical,
    title = "Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction",
    author = "Vlachos, Andreas  and
      Craven, Mark",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1805/",
    pages = "36--40"
}
@inproceedings{mcclosky-etal-2011-event-extraction,
    title = "Event Extraction as Dependency Parsing for {B}io{NLP} 2011",
    author = "McClosky, David  and
      Surdeanu, Mihai  and
      Manning, Christopher",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1806/",
    pages = "41--45"
}
@inproceedings{riedel-mccallum-2011-robust,
    title = "Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation",
    author = "Riedel, Sebastian  and
      McCallum, Andrew",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1807/",
    pages = "46--50"
}
@inproceedings{riedel-etal-2011-model,
    title = "Model Combination for Event Extraction in {B}io{NLP} 2011",
    author = "Riedel, Sebastian  and
      McClosky, David  and
      Surdeanu, Mihai  and
      McCallum, Andrew  and
      Manning, Christopher D.",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1808/",
    pages = "51--55"
}
@inproceedings{bossy-etal-2011-bionlp,
    title = "{B}io{NLP} Shared Task 2011 - Bacteria Biotope",
    author = "Bossy, Robert  and
      Jourde, Julien  and
      Bessi{\`e}res, Philippe  and
      van de Guchte, Maarten  and
      N{\'e}dellec, Claire",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1809/",
    pages = "56--64"
}
@inproceedings{jourde-etal-2011-bionlp,
    title = "{B}io{NLP} Shared Task 2011 {--} Bacteria Gene Interactions and Renaming",
    author = {Jourde, Julien  and
      Manine, Alain-Pierre  and
      Veber, Philippe  and
      Fort, Kar{\"e}n  and
      Bossy, Robert  and
      Alphonse, Erick  and
      Bessi{\`e}res, Philippe},
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1810/",
    pages = "65--73"
}
@inproceedings{nguyen-etal-2011-overview,
    title = "Overview of {B}io{NLP} 2011 Protein Coreference Shared Task",
    author = "Nguyen, Ngan  and
      Kim, Jin-Dong  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1811/",
    pages = "74--82"
}
@inproceedings{pyysalo-etal-2011-overview-entity,
    title = "Overview of the Entity Relations ({REL}) supporting task of {B}io{NLP} Shared Task 2011",
    author = "Pyysalo, Sampo  and
      Ohta, Tomoko  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1812/",
    pages = "83--88"
}
@inproceedings{kim-etal-2011-taming,
    title = "The Taming of Reconcile as a Biomedical Coreference Resolver",
    author = "Kim, Youngjun  and
      Riloff, Ellen  and
      Gilbert, Nathan",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1813/",
    pages = "89--93"
}
@inproceedings{nguyen-tsuruoka-2011-extracting,
    title = "Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution",
    author = "Nguyen, Nhung T. H.  and
      Tsuruoka, Yoshimasa",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1814/",
    pages = "94--101"
}
@inproceedings{ratkovic-etal-2011-bionlp,
    title = "{B}io{NLP} 2011 Task Bacteria Biotope {--} The Alvis system",
    author = "Ratkovic, Zorana  and
      Golik, Wiktoria  and
      Warnier, Pierre  and
      Veber, Philippe  and
      N{\'e}dellec, Claire",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1815/",
    pages = "102--111"
}
@inproceedings{stenetorp-etal-2011-bionlp,
    title = "{B}io{NLP} Shared Task 2011: Supporting Resources",
    author = "Stenetorp, Pontus  and
      Topi{\'c}, Goran  and
      Pyysalo, Sampo  and
      Ohta, Tomoko  and
      Kim, Jin-Dong  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1816/",
    pages = "112--120"
}
@inproceedings{warnier-nedellec-2011-sentence,
    title = "Sentence Filtering for {B}io{NLP}: Searching for Renaming Acts",
    author = "Warnier, Pierre  and
      N{\'e}dellec, Claire",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1817/",
    pages = "121--129"
}
@inproceedings{mcgrath-etal-2011-complex,
    title = "Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features",
    author = "McGrath, Liam R.  and
      Domico, Kelly  and
      Corley, Courtney D.  and
      Webb-Robertson, Bobbie-Jo",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1818/",
    pages = "130--137"
}
@inproceedings{casillas-etal-2011-using,
    title = "Using Kybots for Extracting Events in Biomedical Texts",
    author = "Casillas, Arantza  and
      D{\'i}az de Ilarraza, Arantza  and
      Gojenola, Koldo  and
      Oronoz, Maite  and
      Rigau, German",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1819/",
    pages = "138--142"
}
@inproceedings{bui-sloot-2011-extracting,
    title = "Extracting Biological Events from Text Using Simple Syntactic Patterns",
    author = "Bui, Quoc-Chinh  and
      Sloot, Peter M.A.",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1820/",
    pages = "143--146"
}
@inproceedings{van-landeghem-etal-2011-detecting,
    title = "Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction",
    author = "Van Landeghem, Sofie  and
      Abeel, Thomas  and
      De Baets, Bernard  and
      Van de Peer, Yves",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1821/",
    pages = "147--148"
}
@inproceedings{le-minh-etal-2011-pattern,
    title = "A Pattern Approach for Biomedical Event Annotation",
    author = "Le Minh, Quang  and
      Nguyen Truong, Son  and
      Ho Bao, Quoc",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1822/",
    pages = "149--150"
}
@inproceedings{tuggener-etal-2011-incremental,
    title = "An Incremental Model for the Coreference Resolution Task of {B}io{NLP} 2011",
    author = "Tuggener, Don  and
      Klenner, Manfred  and
      Schneider, Gerold  and
      Clematide, Simon  and
      Rinaldi, Fabio",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1823/",
    pages = "151--152"
}
@inproceedings{emadzadeh-etal-2011-double,
    title = "Double Layered Learning for Biological Event Extraction from Text",
    author = "Emadzadeh, Ehsan  and
      Nikfarjam, Azadeh  and
      Gonzalez, Graciela",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1824/",
    pages = "153--154"
}
@inproceedings{quirk-etal-2011-msr,
    title = "{MSR}-{NLP} Entry in {B}io{NLP} Shared Task 2011",
    author = "Quirk, Chris  and
      Choudhury, Pallavi  and
      Gamon, Michael  and
      Vanderwende, Lucy",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1825/",
    pages = "155--163"
}
@inproceedings{liu-etal-2011-graphs,
    title = "From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text",
    author = "Liu, Haibin  and
      Komandur, Ravikumar  and
      Verspoor, Karin",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1826/",
    pages = "164--172"
}
@inproceedings{kilicoglu-bergler-2011-adapting,
    title = "Adapting a General Semantic Interpretation Approach to Biological Event Extraction",
    author = "Kilicoglu, Halil  and
      Bergler, Sabine",
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1827/",
    pages = "173--182"
}
@inproceedings{bjorne-salakoski-2011-generalizing,
    title = "Generalizing Biomedical Event Extraction",
    author = {Bj{\"o}rne, Jari  and
      Salakoski, Tapio},
    editor = "Tsujii, Jun{'}ichi  and
      Kim, Jin-Dong  and
      Pyysalo, Sampo",
    booktitle = "Proceedings of {B}io{NLP} Shared Task 2011 Workshop",
    month = jun,
    year = "2011",
    address = "Portland, Oregon, USA",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W11-1828/",
    pages = "183--191"
}