@proceedings{ws-2009-bionlp-2009,
    title = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    editor = "Tsujii, Jun{'}ichi",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1400/"
}
@inproceedings{kim-etal-2009-overview,
    title = "Overview of {B}io{NLP}{'}09 Shared Task on Event Extraction",
    author = "Kim, Jin-Dong  and
      Ohta, Tomoko  and
      Pyysalo, Sampo  and
      Kano, Yoshinobu  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1401/",
    pages = "1--9"
}
@inproceedings{bjorne-etal-2009-extracting,
    title = "Extracting Complex Biological Events with Rich Graph-Based Feature Sets",
    author = {Bj{\"o}rne, Jari  and
      Heimonen, Juho  and
      Ginter, Filip  and
      Airola, Antti  and
      Pahikkala, Tapio  and
      Salakoski, Tapio},
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1402/",
    pages = "10--18"
}
@inproceedings{buyko-etal-2009-event,
    title = "Event Extraction from Trimmed Dependency Graphs",
    author = "Buyko, Ekaterina  and
      Faessler, Erik  and
      Wermter, Joachim  and
      Hahn, Udo",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1403/",
    pages = "19--27"
}
@inproceedings{kaljurand-etal-2009-uzurich,
    title = "{UZ}urich in the {B}io{NLP} 2009 Shared Task",
    author = "Kaljurand, Kaarel  and
      Schneider, Gerold  and
      Rinaldi, Fabio",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1404/",
    pages = "28--36"
}
@inproceedings{vlachos-etal-2009-biomedical,
    title = "Biomedical Event Extraction without Training Data",
    author = "Vlachos, Andreas  and
      Buttery, Paula  and
      {\'O} S{\'e}aghdha, Diarmuid  and
      Briscoe, Ted",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1405/",
    pages = "37--40"
}
@inproceedings{riedel-etal-2009-markov,
    title = "A {M}arkov {L}ogic Approach to Bio-Molecular Event Extraction",
    author = "Riedel, Sebastian  and
      Chun, Hong-Woo  and
      Takagi, Toshihisa  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1406/",
    pages = "41--49"
}
@inproceedings{cohen-etal-2009-high,
    title = "High-precision biological event extraction with a concept recognizer",
    author = "Cohen, K. Bretonnel  and
      Verspoor, Karin  and
      Johnson, Helen  and
      Roeder, Chris  and
      Ogren, Philip  and
      Baumgartner, William  and
      White, Elizabeth  and
      Hunter, Lawrence",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1407/",
    pages = "50--58"
}
@inproceedings{morante-etal-2009-memory,
    title = "A memory-based learning approach to event extraction in biomedical texts",
    author = "Morante, Roser  and
      Van Asch, Vincent  and
      Daelemans, Walter",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1408/",
    pages = "59--67"
}
@inproceedings{neves-etal-2009-extraction,
    title = "Extraction of biomedical events using case-based reasoning",
    author = "Neves, Mariana  and
      Carazo, Jos{\'e}-Mar{\'i}a  and
      Pascual-Montano, Alberto",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1409/",
    pages = "68--76"
}
@inproceedings{mackinlay-etal-2009-biomedical,
    title = "Biomedical Event Annotation with {CRF}s and Precision Grammars",
    author = "MacKinlay, Andrew  and
      Martinez, David  and
      Baldwin, Timothy",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1410/",
    pages = "77--85"
}
@inproceedings{hakenberg-etal-2009-molecular,
    title = "Molecular event extraction from Link Grammar parse trees",
    author = {Hakenberg, J{\"o}rg  and
      Solt, Ill{\'e}s  and
      Tikk, Domonkos  and
      Tari, Luis  and
      Rheinl{\"a}nder, Astrid  and
      Quang Long, Nguyen  and
      Gonzalez, Graciela  and
      Leser, Ulf},
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1411/",
    pages = "86--94"
}
@inproceedings{georgiev-etal-2009-tunable,
    title = "Tunable Domain-Independent Event Extraction in the {MIRA} Framework",
    author = "Georgiev, Georgi  and
      Ganchev, Kuzman  and
      Momchev, Vassil  and
      Peychev, Deyan  and
      Nakov, Preslav  and
      Roberts, Angus",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1412/",
    pages = "95--98"
}
@inproceedings{ahmed-etal-2009-bioeve,
    title = "{B}io{E}ve: Bio-Molecular Event Extraction from Text Using Semantic Classification and Dependency Parsing",
    author = "Ahmed, Syed Toufeeq  and
      Nair, Radhika  and
      Patel, Chintan  and
      Davulcu, Hasan",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1413/",
    pages = "99--102"
}
@inproceedings{saetre-etal-2009-protein,
    title = "From Protein-Protein Interaction to Molecular Event Extraction",
    author = "S{\ae}tre, Rune  and
      Miwa, Makoto  and
      Yoshida, Kazuhiro  and
      Tsujii, Jun{'}ichi",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1414/",
    pages = "103--106"
}
@inproceedings{lee-etal-2009-multi,
    title = "A Multi-Phase Approach to Biomedical Event Extraction",
    author = "Lee, Hyoung-Gyu  and
      Cho, Han-Cheol  and
      Kim, Min-Jeong  and
      Lee, Joo-Young  and
      Hong, Gumwon  and
      Rim, Hae-Chang",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1415/",
    pages = "107--110"
}
@inproceedings{ozgur-radev-2009-supervised,
    title = "Supervised Classification for Extracting Biomedical Events",
    author = {{\"O}zg{\"u}r, Arzucan  and
      Radev, Dragomir},
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1416/",
    pages = "111--114"
}
@inproceedings{sarafraz-etal-2009-biomedical,
    title = "Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances",
    author = "Sarafraz, Farzaneh  and
      Eales, James  and
      Mohammadi, Reza  and
      Dickerson, Jonathan  and
      Robertson, David  and
      Nenadic, Goran",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1417/",
    pages = "115--118"
}
@inproceedings{kilicoglu-bergler-2009-syntactic,
    title = "Syntactic Dependency Based Heuristics for Biological Event Extraction",
    author = "Kilicoglu, Halil  and
      Bergler, Sabine",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1418/",
    pages = "119--127"
}
@inproceedings{van-landeghem-etal-2009-analyzing,
    title = "Analyzing text in search of bio-molecular events: a high-precision machine learning framework",
    author = "Van Landeghem, Sofie  and
      Saeys, Yvan  and
      De Baets, Bernard  and
      Van de Peer, Yves",
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1419/",
    pages = "128--136"
}
@inproceedings{mora-etal-2009-exploring,
    title = "Exploring ways beyond the simple supervised learning approach for biological event extraction",
    author = {M{\'o}ra, Gy{\"o}rgy  and
      Farkas, Rich{\'a}rd  and
      Szarvas, Gy{\"o}rgy  and
      Moln{\'a}r, Zsolt},
    editor = "Tsujii, Jun{'}ichi",
    booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop Companion Volume for Shared Task",
    month = jun,
    year = "2009",
    address = "Boulder, Colorado",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W09-1420/",
    pages = "137--140"
}