@proceedings{ws-2007-biological,
    title = "Biological, translational, and clinical language processing",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1000/"
}
@inproceedings{roark-etal-2007-syntactic,
    title = "Syntactic complexity measures for detecting Mild Cognitive Impairment",
    author = "Roark, Brian  and
      Mitchell, Margaret  and
      Hollingshead, Kristy",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1001/",
    pages = "1--8"
}
@inproceedings{mcinnes-etal-2007-determining,
    title = "Determining the Syntactic Structure of Medical Terms in Clinical Notes",
    author = "McInnes, Bridget  and
      Pedersen, Ted  and
      Pakhomov, Serguei",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1002/",
    pages = "9--16"
}
@inproceedings{doan-etal-2007-role,
    title = "The Role of Roles in Classifying Annotated Biomedical Text",
    author = "Doan, Son  and
      Kawazoe, Ai  and
      Collier, Nigel",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1003/",
    pages = "17--24"
}
@inproceedings{pyysalo-etal-2007-unification,
    title = "On the unification of syntactic annotations under the {S}tanford dependency scheme: A case study on {B}io{I}nfer and {GENIA}",
    author = "Pyysalo, Sampo  and
      Ginter, Filip  and
      Laippala, Veronika  and
      Haverinen, Katri  and
      Heimonen, Juho  and
      Salakoski, Tapio",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1004/",
    pages = "25--32"
}
@inproceedings{liu-etal-2007-unsupervised,
    title = "An Unsupervised Method for Extracting Domain-specific Affixes in Biological Literature",
    author = "Liu, Haibin  and
      Blouin, Christian  and
      Ke{\v{s}}elj, Vlado",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1005/",
    pages = "33--40"
}
@inproceedings{xu-etal-2007-combining,
    title = "Combining multiple evidence for gene symbol disambiguation",
    author = "Xu, Hua  and
      Fan, Jung-Wei  and
      Friedman, Carol",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1006/",
    pages = "41--48"
}
@inproceedings{elhadad-sutaria-2007-mining,
    title = "Mining a Lexicon of Technical Terms and Lay Equivalents",
    author = "Elhadad, Noemie  and
      Sutaria, Komal",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1007/",
    pages = "49--56"
}
@inproceedings{corbett-etal-2007-annotation,
    title = "Annotation of Chemical Named Entities",
    author = "Corbett, Peter  and
      Batchelor, Colin  and
      Teufel, Simone",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1008/",
    pages = "57--64"
}
@inproceedings{alex-etal-2007-recognising,
    title = "Recognising Nested Named Entities in Biomedical Text",
    author = "Alex, Beatrice  and
      Haddow, Barry  and
      Grover, Claire",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1009/",
    pages = "65--72"
}
@inproceedings{hearst-etal-2007-exploring,
    title = "Exploring the Efficacy of Caption Search for Bioscience Journal Search Interfaces",
    author = "Hearst, Marti  and
      Divoli, Anna  and
      Jerry, Ye  and
      Wooldridge, Michael",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1010/",
    pages = "73--80"
}
@inproceedings{chapman-etal-2007-context,
    title = "{C}on{T}ext: An Algorithm for Identifying Contextual Features from Clinical Text",
    author = "Chapman, Wendy  and
      Dowling, John  and
      Chu, David",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1011/",
    pages = "81--88"
}
@inproceedings{madkour-etal-2007-bionoculars,
    title = "{B}io{N}oculars: Extracting Protein-Protein Interactions from Biomedical Text",
    author = "Madkour, Amgad  and
      Darwish, Kareem  and
      Hassan, Hany  and
      Hassan, Ahmed  and
      Emam, Ossama",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1012/",
    pages = "89--96"
}
@inproceedings{pestian-etal-2007-shared,
    title = "A shared task involving multi-label classification of clinical free text",
    author = "Pestian, John P.  and
      Brew, Chris  and
      Matykiewicz, Pawel  and
      Hovermale, DJ  and
      Johnson, Neil  and
      Cohen, K. Bretonnel  and
      Duch, Wlodzislaw",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1013/",
    pages = "97--104"
}
@inproceedings{aronson-etal-2007-indexing,
    title = "From indexing the biomedical literature to coding clinical text: experience with {MTI} and machine learning approaches",
    author = "Aronson, Alan R.  and
      Bodenreider, Olivier  and
      Demner-Fushman, Dina  and
      Fung, Kin Wah  and
      Lee, Vivian K.  and
      Mork, James G.  and
      N{\'e}v{\'e}ol, Aur{\'e}lie  and
      Peters, Lee  and
      Rogers, Willie J.",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1014/",
    pages = "105--112"
}
@inproceedings{bouffier-poibeau-2007-automatically,
    title = "Automatically Restructuring Practice Guidelines using the {GEM} {DTD}",
    author = "Bouffier, Amanda  and
      Poibeau, Thierry",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1015/",
    pages = "113--120"
}
@inproceedings{chung-coiera-2007-study,
    title = "A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences",
    author = "Chung, Grace  and
      Coiera, Enrico",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1016/",
    pages = "121--128"
}
@inproceedings{crammer-etal-2007-automatic,
    title = "Automatic Code Assignment to Medical Text",
    author = "Crammer, Koby  and
      Dredze, Mark  and
      Ganchev, Kuzman  and
      Pratim Talukdar, Partha  and
      Carroll, Steven",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1017/",
    pages = "129--136"
}
@inproceedings{fiszman-etal-2007-interpreting,
    title = "Interpreting comparative constructions in biomedical text",
    author = "Fiszman, Marcelo  and
      Demner-Fushman, Dina  and
      Lang, Francois M.  and
      Goetz, Philip  and
      Rindflesch, Thomas C.",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1018/",
    pages = "137--144"
}
@inproceedings{haddow-matthews-2007-extraction,
    title = "The Extraction of Enriched Protein-Protein Interactions from Biomedical Text",
    author = "Haddow, Barry  and
      Matthews, Michael",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1019/",
    pages = "145--152"
}
@inproceedings{hakenberg-2007-whats,
    title = "What{'}s in a gene name? Automated refinement of gene name dictionaries",
    author = {Hakenberg, J{\"o}rg},
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1020/",
    pages = "153--160"
}
@inproceedings{hardcastle-hallett-2007-exploring,
    title = "Exploring the Use of {NLP} in the Disclosure of Electronic Patient Records",
    author = "Hardcastle, David  and
      Hallett, Catalina",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1021/",
    pages = "161--162"
}
@inproceedings{lewin-2007-basenps,
    title = "{B}ase{NP}s that contain gene names: domain specificity and genericity",
    author = "Lewin, Ian",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1022/",
    pages = "163--170"
}
@inproceedings{mcintosh-curran-2007-challenges,
    title = "Challenges for extracting biomedical knowledge from full text",
    author = "McIntosh, Tara  and
      Curran, James R.",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1023/",
    pages = "171--178"
}
@inproceedings{miller-etal-2007-adaptation,
    title = "Adaptation of {POS} Tagging for Multiple {B}io{M}edical Domains",
    author = "Miller, John E.  and
      Torii, Manabu  and
      Vijay-Shanker, K.",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1024/",
    pages = "179--180"
}
@inproceedings{mykowiecka-marciniak-2007-information,
    title = "Information Extraction from Patients' Free Form Documentation",
    author = "Mykowiecka, Agnieszka  and
      Marciniak, Malgorzata",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1025/",
    pages = "181--182"
}
@inproceedings{neveol-etal-2007-automatic,
    title = "Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations",
    author = "N{\'e}v{\'e}ol, Aur{\'e}lie  and
      Mork, James G.  and
      Aronson, Alan R.",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1026/",
    pages = "183--190"
}
@inproceedings{patrick-etal-2007-developing,
    title = "Developing Feature Types for Classifying Clinical Notes",
    author = "Patrick, Jon  and
      Zhang, Yitao  and
      Wang, Yefeng",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1027/",
    pages = "191--192"
}
@inproceedings{poprat-hahn-2007-quantitative,
    title = "Quantitative Data on Referring Expressions in Biomedical Abstracts",
    author = "Poprat, Michael  and
      Hahn, Udo",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1028/",
    pages = "193--194"
}
@inproceedings{sanchez-poesio-2007-discovering,
    title = "Discovering contradicting protein-protein interactions in text",
    author = "Sanchez, Olivia  and
      Poesio, Massimo",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1029/",
    pages = "195--196"
}
@inproceedings{sinclair-webber-2007-marking,
    title = "Marking time in developmental biology",
    author = "Sinclair, Gail  and
      Webber, Bonnie",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1030/",
    pages = "197--198"
}
@inproceedings{vlachos-2007-evaluating,
    title = "Evaluating and combining and biomedical named entity recognition systems",
    author = "Vlachos, Andreas",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1031/",
    pages = "199--200"
}
@inproceedings{wilbur-2007-unsupervised,
    title = "Unsupervised Learning of the Morpho-Semantic Relationship in {MEDLINE}",
    author = "Wilbur, W. John",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1032/",
    pages = "201--208"
}
@inproceedings{yoshida-tsujii-2007-reranking,
    title = "Reranking for Biomedical Named-Entity Recognition",
    author = "Yoshida, Kazuhiro  and
      Tsujii, Jun{'}ichi",
    editor = "Cohen, K. Bretonnel  and
      Demner-Fushman, Dina  and
      Friedman, Carol  and
      Hirschman, Lynette  and
      Pestian, John",
    booktitle = "Biological, translational, and clinical language processing",
    month = jun,
    year = "2007",
    address = "Prague, Czech Republic",
    publisher = "Association for Computational Linguistics",
    url = "https://preview.aclanthology.org/fix-old-resolve/W07-1033/",
    pages = "209--216"
}